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[186801_s_at] --- /// --- /// ---

Description F45D11.15 /REP_DB=WormBase Gene ID /WP=CE20794 /TR=Q9N2K4 /GB=AAF39811.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 42      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 17      6grp_total > 20      4grp_total > 57      6grp_highest_sub > 03      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7916
1 2 3 4 range
A 1712.2
(-1.6)
P 		6093.1
(2.1)
P 		7154.4
(3)
P 		118.5
(-3)
P 		7036
B 1426
(-1.9)
P 		7534.4
(3)
P 		7553.6
(3)
P 		118.7
(-3)
P 		7435
C 1729.8
(-1.8)
P 		6428.6
(1.8)
P 		8034.3
(3)
P 		184.7
(-3)
P 		7850
avr 1622.7
(-1.8) 		6685.4
(2.3) 		7580.8
(3) 		140.6
(-3) 		7440

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22491
1 2 3 4 5 6 range
A 1690.6
(-3)
P 		19005.4
(1.6)
P 		24181.2
(3)
P 		11797.6
(-0.3)
P 		4453.7
(-2.3)
P 		1859.1
(-3)
P 		22491
B 1997.3
(-3)
P 		16463.7
(1.9)
P 		19709.7
(3)
P 		10341.9
(-0.2)
P 		4776.9
(-2.1)
P 		2175.8
(-2.9)
P 		17712
C 1977.9
(-3)
P 		19820.2
(3)
P 		16704.6
(2)
P 		13165.8
(0.8)
P 		5385.7
(-1.9)
P 		2435.9
(-2.8)
P 		17842
avr 1888.6
(-3) 		18429.8
(2.4) 		20198.5
(3) 		11768.4
(0.2) 		4872.1
(-2) 		2156.9
(-2.9) 		18310
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2783
1 2 3 4 range
A 623.4
(-1)
P 		1322.7
(1.2)
P 		1870.3
(3)
P 		17.3
(-3)
P 		1853
B 454.7
(-1.6)
P 		1860.8
(3)
P 		1750.4
(2.6)
P 		25.3
(-3)
P 		1836
C 572.6
(-1.8)
P 		1848.2
(0.9)
P 		2800.2
(3)
P 		31.2
(-3)
P 		2769
avr 550.2
(-1.5) 		1677.2
(1.7) 		2140.3
(3) 		24.6
(-3) 		2116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6448
1 2 3 4 5 6 range
A 311.6
(-3)
P 		6759.3
(3)
P 		5266.2
(1.6)
P 		2992.2
(-0.5)
P 		1343.9
(-2)
P 		452.6
(-2.9)
P 		6448
B 695
(-3)
P 		5480.1
(3)
P 		4786.1
(2.1)
P 		2739.2
(-0.4)
P 		1940.8
(-1.4)
P 		811.3
(-2.9)
P 		4785
C 733.1
(-3)
P 		6047.7
(3)
P 		4251.6
(1)
P 		2647.6
(-0.8)
P 		1742.7
(-1.9)
P 		815.4
(-2.9)
P 		5315
avr 579.9
(-3) 		6095.7
(3) 		4768
(1.6) 		2793
(-0.6) 		1675.8
(-1.8) 		693.1
(-2.9) 		5516
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186801_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4179
Sequence Type Exemplar sequence
Representative Public ID F45D11.15 NCBI
Target Description F45D11.15 /REP_DB=WormBase Gene ID /WP=CE20794 /TR=Q9N2K4 /GB=AAF39811.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061482(11), NM_061484(11), NM_061486(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061482 NCBI Caenorhabditis elegans F45D11.14 (F45D11.14) mRNA, complete cds. 11/11 None
NM_061484 NCBI Caenorhabditis elegans F45D11.15 (F45D11.15) mRNA, complete cds. 11/11 None
NM_061486 NCBI Caenorhabditis elegans F45D11.16 (F45D11.16) mRNA, complete cds. 11/11 None
SNAP00000019557 ENSEMBL cdna:SNAP chromosome:CEL140:II:1004622:1006481:-1 11/11 None
SNAP00000019560 ENSEMBL cdna:SNAP chromosome:CEL140:II:1010450:1012309:-1 11/11 None
SNAP00000019563 ENSEMBL cdna:SNAP chromosome:CEL140:II:1016268:1018127:-1 11/11 None
GENEFINDER00000019570 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1010450:1012309:-1 11/11 None
GENEFINDER00000019572 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1004622:1006481:-1 11/11 None
GENEFINDER00000019577 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1016268:1018127:-1 11/11 None
F45D11.14 ENSEMBL cdna:known chromosome:CEL140:II:1004622:1006481:-1 gene:F45D11.14 11/11 None
F45D11.15 ENSEMBL cdna:known chromosome:CEL140:II:1010450:1012288:-1 gene:F45D11.15 11/11 None
F45D11.16 ENSEMBL cdna:known chromosome:CEL140:II:1016268:1018106:-1 gene:F45D11.16 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1004620-1006459(-) 100.0 100.0
chrII:1010448-1012287(-) 100.0 100.0
chrII:1016266-1018105(-) 100.0 100.0
Public Domain and Genome References
Gene Title


Ensembl F45D11.14
F45D11.15
F45D11.16
Entrez Gene 173480 Entrez gene
185788 Entrez gene
185789 Entrez gene
SwissProt Q9N5T2 EMBL-EBI
Q9N2K4 EMBL-EBI
WormBase CE23736 Wormbase
CE20794 Wormbase
CE20794 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39822 Hypothetical protein F45D11.14 [Caenorhabditis elegans] ref|NP_493883.1| F45D11.14 [Caenorhabditis elegans] 0.0
blast AAF39810 Hypothetical protein F45D11.16 [Caenorhabditis elegans] gb|AAF39811.1| Hypothetical protein F45D11.15 [Caenorhabditis elegans] ref|NP_493885.1| F45D11.15 [Caenorhabditis elegans] ref|NP_493887.1| F45D11.16 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 1.0E-126
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:186801_S_AT
gataacttactacactactctggtcgaacaatgggagaaacattatttgaacgatagacc
atactggccgaaactcaaaaagtacgtggagagaattcaaggagaaggatcgtttgataa
ggacgaagacatggccaccgagctcaaaaaaggattagattctattctcacagaggacaa
cttctatctgtatgttttcgagaaaaacgttcactacgagattcacgtcgtgaaacccga
aatggtgtttgtctcgacaaatcgcggaaagttcagcgtgatcatttctcgtgcatttga
gcacagtgagtacacatgtggacaatattggaagaaactggataatattatgtatcggag
aattgaaagaagcatttggtatgctttggagactcatatgaaggagttcgttcaatgggc
agtggcatcatatgcgaagaacgacttcaagggttgctcatacttcttggcattttcttc
cagaaatgtggctgtcagatggacaagaaaacatggggctgaaaaaggtccaggattcat
caattgggatggacaactgactgttttcaatgtcaccactggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATAACTTACTACACTACTCTGGTC 680 357 903 Antisense
ACACTACTCTGGTCGAACAATGGGA 529 109 914 Antisense
AGACATGGCCACCGAGCTCAAAAAA 261 69 1029 Antisense
GGACAACTTCTATCTGTATGTTTTC 300 527 1077 Antisense
GGTGTTTGTCTCGACAAATCGCGGA 555 499 1146 Antisense
CGCGGAAAGTTCAGCGTGATCATTT 3 257 1165 Antisense
CATTTGGTATGCTTTGGAGACTCAT 362 213 1275 Antisense
CAATGGGCAGTGGCATCATATGCGA 279 181 1315 Antisense
GAAGAACGACTTCAAGGGTTGCTCA 288 183 1338 Antisense
AAGGGTTGCTCATACTTCTTGGCAT 142 159 1351 Antisense
GACTGTTTTCAATGTCACCACTGGC 611 375 1461 Antisense
Sequence Source Affymetrix Proprietary Database