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[186800_s_at]

Description C33F10.11 /REP_DB=WormBase Gene ID /WP=CE04143 /TR=Q18388 /GB=AAK31479.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 99      4grp_highest_8_8 > 21      4grp_high_8_8 > 23      6grp_highest_nonorm > 91      6grp_total > 99      4grp_total > 0      6grp_highest_sub > In      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 65.7
(-2.7)
P 		63.6
(-3)
P 		70.8
(-1.9)
P 		102.3
(3)
P 		39
B 74.4
(-0.9)
P 		61.7
(-3)
P 		98.7
(3)
P 		64.8
(-2.5)
P 		37
C 54.1
(-3)
P 		61
(-2.2)
P 		73.4
(-0.9)
P 		108.2
(3)
P 		54
avr 64.7
(-2.5) 		62.1
(-3) 		81
(0.8) 		91.8
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 351
1 2 3 4 5 6 range
A 51.4
(-2.8)
P 		37.1
(-3)
P 		46.8
(-2.8)
P 		93.7
(-2)
P 		339.7
(2.3)
P 		382.3
(3)
P 		345
B 64.1
(-2.4)
P 		31.5
(-3)
P 		46.1
(-2.7)
P 		92.1
(-1.8)
P 		337.6
(3)
P 		322.8
(2.7)
P 		306
C 47.9
(-3)
P 		60.4
(-2.8)
P 		80.8
(-2.4)
P 		108.2
(-1.8)
P 		355.8
(3)
P 		318.7
(2.3)
P 		308
avr 54.5
(-2.8) 		43
(-3) 		57.9
(-2.7) 		98
(-1.9) 		344.4
(3) 		341.3
(2.9) 		301
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 23.9
(3)
P 		13.8
(-3)
P 		18.5
(-0.2)
P 		15
(-2.3)
P 		10
B 23.7
(3)
P 		15.2
(-2.2)
P 		22.9
(2.5)
P 		13.8
(-3)
P 		10
C 17.9
(-2.7)
P 		17.5
(-3)
P 		25.6
(3)
P 		18.2
(-2.5)
P 		8
avr 21.8
(2.6) 		15.5
(-3) 		22.3
(3) 		15.7
(-2.8) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 9.5
(-3)
P 		13.2
(-2.8)
P 		10.2
(-3)
P 		23.8
(-2.1)
P 		102.5
(3)
P 		93.1
(2.4)
P 		93
B 22.3
(-2.4)
P 		10.5
(-3)
P 		11.2
(-3)
P 		24.4
(-2.3)
P 		137.2
(3)
P 		120.4
(2.2)
P 		127
C 17.7
(-3)
P 		18.4
(-3)
P 		20.6
(-2.8)
P 		21.8
(-2.7)
P 		115.1
(3)
P 		106.7
(2.5)
P 		97
avr 16.5
(-2.9) 		14
(-3) 		14
(-3) 		23.3
(-2.5) 		118.3
(3) 		106.7
(2.3) 		104
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186800_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4723
Sequence Type Exemplar sequence
Representative Public ID C33F10.11 NCBI
Target Description C33F10.11 /REP_DB=WormBase Gene ID /WP=CE04143 /TR=Q18388 /GB=AAK31479.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062467(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062467 NCBI Caenorhabditis elegans C33F10.11 (C33F10.11) mRNA, complete cds. 11/11 None
SNAP00000016473 ENSEMBL cdna:SNAP chromosome:CEL140:II:4834175:4834768:-1 11/11 None
GENEFINDER00000016485 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4834175:4834768:-1 11/11 None
C33F10.11 ENSEMBL cdna:known chromosome:CEL140:II:4834151:4834800:-1 gene:C33F10.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4835064-4835658(+) 94.35 94.35
chrII:4834173-4834767(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C33F10.11
Entrez Gene 173833 Entrez gene
SwissProt Q18388 EMBL-EBI
WormBase CE04143 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494868 C33F10.11 [Caenorhabditis elegans] gb|AAK31479.1| Hypothetical protein C33F10.11 [Caenorhabditis elegans] 1.0E-89
blast T15754 hypothetical protein C33F10.1 - Caenorhabditis elegans 5.0E-80
blast NP_494869 C33F10.1 [Caenorhabditis elegans] gb|AAK31473.2| Hypothetical protein C33F10.1 [Caenorhabditis elegans] 1.0E-73
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494868.1 2 7-29,111-133
C33F10.11 2 7-29,111-133
SNAP00000016473 2 7-29,111-133
GENEFINDER00000016485 2 7-29,111-133
Sequence
Target Sequence 
>C. ELEGANS:186800_S_AT
tcataccatttctcactttgtcagttattcttctcattgctcttctggcagttttcaaca
cgacgcttgcatctaacagcatctgccacatcaccagaaagccactgatgcttccggctc
caggcgatgtctacaagaagccagtacagttttacacgaatgtcacagtgtcagtgtttg
ctccagtagtgtcacctcttgatgtctacacaaacaccaccaagtcaactgcttttgctc
cagctcagaacatcaaagtggctgatattcttgaagaagatgctgatgcaagtcatgtta
gggtaatgagaatcgctggattcattgcacaatccaccatctttctgtttgtctacacca
ttgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATACCATTTCTCACTTTGTCAGT 195 621 47 Antisense
TTGTCAGTTATTCTTCTCATTGCTC 696 707 64 Antisense
GACGCTTGCATCTAACAGCATCTGC 337 381 108 Antisense
GCATCTGCCACATCACCAGAAAGCC 588 309 125 Antisense
ATGTCACAGTGTCAGTGTTTGCTCC 97 49 206 Antisense
TGTCAGTGTTTGCTCCAGTAGTGTC 349 559 215 Antisense
GCTCCAGTAGTGTCACCTCTTGATG 69 299 226 Antisense
ACCTCTTGATGTCTACACAAACACC 163 87 240 Antisense
TGCTGATGCAAGTCATGTTAGGGTA 659 579 327 Antisense
CACAATCCACCATCTTTCTGTTTGT 54 195 374 Antisense
TTTCTGTTTGTCTACACCATTGTCA 100 671 388 Antisense
Sequence Source Affymetrix Proprietary Database