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[186799_at]

Description Y105C5B.15 /REP_DB=WormBase Gene ID /WP=CE24064 /TR=Q9U309 /GB=CAB60319.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 42      4grp_high_8_8 > 58      6grp_highest_nonorm > 62      6grp_total > 21      4grp_total > 61      6grp_highest_sub > 02_03      6grp_high1_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1038
1 2 3 4 range
A 1024
(3)
P 		706.5
(1)
P 		814
(1.7)
P 		59.4
(-3)
A 		965
B 953.4
(3)
P 		896.1
(2.6)
P 		856.1
(2.4)
P 		51.4
(-3)
A 		902
C 1089.2
(3)
P 		630.8
(0.2)
P 		904.5
(1.9)
P 		106.3
(-3)
P 		983
avr 1022.2
(3) 		744.5
(1.2) 		858.2
(2) 		72.4
(-3) 		950

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 443
1 2 3 4 5 6 range
A 262.2
(-2.5)
P 		603.6
(3)
P 		454.4
(0.6)
P 		417.3
(-0)
P 		401
(-0.3)
P 		231.9
(-3)
P 		372
B 289.2
(-2.6)
P 		557.2
(1.8)
P 		628.3
(3)
P 		430.4
(-0.3)
P 		566.6
(2)
P 		266.1
(-3)
P 		362
C 407.2
(-1.2)
P 		506.7
(0.4)
P 		675
(3)
P 		382.3
(-1.5)
P 		469.1
(-0.2)
P 		288
(-3)
P 		387
avr 319.5
(-1.9) 		555.8
(2.4) 		585.9
(3) 		410
(-0.3) 		478.9
(1) 		262
(-3) 		324
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 364
1 2 3 4 range
A 372.8
(3)
P 		153.4
(-0.6)
P 		212.8
(0.4)
P 		8.7
(-3)
A 		364
B 304
(3)
P 		221.3
(1.3)
P 		198.4
(0.8)
P 		11
(-3)
A 		293
C 360.5
(3)
P 		181.3
(-0.1)
P 		315.2
(2.2)
P 		17.9
(-3)
P 		343
avr 345.8
(3) 		185.3
(0.1) 		242.1
(1.1) 		12.5
(-3) 		333

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 182
1 2 3 4 5 6 range
A 48.3
(-3)
P 		214.7
(3)
P 		99
(-1.2)
P 		105.8
(-0.9)
P 		121
(-0.4)
P 		56.4
(-2.7)
P 		166
B 100.6
(-2.9)
P 		185.5
(1)
P 		152.6
(-0.6)
P 		114
(-2.3)
P 		230.2
(3)
P 		99.2
(-3)
P 		131
C 150.9
(1.7)
P 		154.6
(1.9)
P 		171.8
(3)
P 		76.9
(-3)
P 		151.8
(1.7)
P 		96.4
(-1.8)
P 		95
avr 99.9
(-2.1) 		184.9
(3) 		141.1
(0.4) 		98.9
(-2.1) 		167.7
(2) 		84
(-3) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186799_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10173
Sequence Type Exemplar sequence
Representative Public ID Y105C5B.15 NCBI
Target Description Y105C5B.15 /REP_DB=WormBase Gene ID /WP=CE24064 /TR=Q9U309 /GB=CAB60319.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070503(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070503 NCBI Caenorhabditis elegans Y105C5B.15 (Y105C5B.15) mRNA, complete cds. 11/11 None
SNAP00000018399 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15952448:15954774:1 11/11 None
GENEFINDER00000018435 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15951904:15954774:1 11/11 None
Y105C5B.15 ENSEMBL cdna:known chromosome:CEL140:IV:15951884:15954798:1 gene:Y105C5B.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15951909-15954780(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105C5B.15
Entrez Gene 178448 Entrez gene
SwissProt Q9U309 EMBL-EBI
WormBase CE24064 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:252005_AT purple acid phosphatase (PAP21) at
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60319 Hypothetical protein Y105C5B.15 [Caenorhabditis elegans] ref|NP_502904.1| Y105C5B.15 [Caenorhabditis elegans] 0.0
blast T26388 acid phosphatase (EC 3.1.3.2) purple homolog Y105C5B.l precursor [similarity] - Caenorhabditis elegans 0.0
blast CAE57393 Hypothetical protein CBG00342 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.6E-21
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.0E-16
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.6E-21
Sequence
Target Sequence 
>C. ELEGANS:186799_AT
tggagttttgactacgggctcacccatttcataggtctgaactctgagtattacgccgag
attcatacaaaagaagctcaagctcaatacaaatggcttcaggctgatttggcaaagaac
aaggctcaatggactattgtgatgttccatagaccatggtattgctctacaaaggataaa
ggaggatgtaatgattatttggatatgttatctagaaaaggaaacagtgaattgccggga
ttggaaaaattattgtttgaccataaagttgatatggtgttatatgggcataagcacact
tacgagaggatgtggccaatttacgatggaactgggtacaagtcatcggattctggacat
attcggaatgcaaaggcaccagtttatatactaactggatctgcgggctgccacacacat
gaaggaccctccgacgcaccccaatcattttctgcaactcgacttggacaatatggatat
acccgtctcaaagtctacaatacgactcatttgagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGTTTTGACTACGGGCTCACCC 175 549 682 Antisense
GGCTCACCCATTTCATAGGTCTGAA 366 539 698 Antisense
GAACTCTGAGTATTACGCCGAGATT 18 349 720 Antisense
AGACCATGGTATTGCTCTACAAAGG 418 69 832 Antisense
GAGAGGATGTGGCCAATTTACGATG 98 393 985 Antisense
CTGGGTACAAGTCATCGGATTCTGG 291 241 1013 Antisense
TATATACTAACTGGATCTGCGGGCT 171 661 1066 Antisense
GGGCTGCCACACACATGAAGGACCC 27 491 1086 Antisense
CCAATCATTTTCTGCAACTCGACTT 630 277 1122 Antisense
GGATATACCCGTCTCAAAGTCTACA 113 509 1156 Antisense
GTCTACAATACGACTCATTTGAGCA 254 469 1174 Antisense
Sequence Source Affymetrix Proprietary Database