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[186798_at]

Description Y51H7BR.6 /REP_DB=WormBase Gene ID /WP=CE25375 /TR=Q9N3K2 /GB=AAF60749.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 19      6grp_cgc > 72      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 22.9
(-3)
A 		48.2
(1.8)
A 		31.6
(-1.4)
A 		54.7
(3)
A 		32
B 50.4
(-1.2)
P 		70.6
(3)
A 		41.8
(-3)
A 		48.1
(-1.7)
A 		29
C 58.7
(-1.6)
P 		37.3
(-2.6)
A 		29.4
(-3)
A 		152.8
(3)
M 		123
avr 44
(-1.9) 		52
(-0.9) 		34.3
(-3) 		85.2
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 58.1
(0.4)
A 		37.7
(-1)
A 		94
(3)
P 		38.1
(-1)
A 		9.6
(-3)
A 		28.7
(-1.6)
A 		84
B 25.8
(-2.4)
A 		80.3
(3)
P 		32.2
(-1.8)
A 		38.1
(-1.2)
P 		20.1
(-3)
P 		38.2
(-1.2)
A 		60
C 19.7
(-3)
A 		51
(3)
P 		24.7
(-2)
A 		47.7
(2.4)
M 		40.1
(0.9)
P 		34.1
(-0.2)
P 		31
avr 34.5
(-1) 		56.3
(3) 		50.3
(1.9) 		41.3
(0.3) 		23.3
(-3) 		33.7
(-1.1) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 8.3
(-2.3)
A 		10.5
(3)
A 		8.3
(-2.3)
A 		8
(-3)
A 		3
B 16.1
(2)
P 		17.4
(3)
A 		9.7
(-3)
A 		10.3
(-2.5)
A 		8
C 19.4
(0.5)
P 		10.7
(-2.8)
A 		10.2
(-3)
A 		25.8
(3)
M 		16
avr 14.6
(2.9) 		12.9
(1) 		9.4
(-3) 		14.7
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 10.7
(-0.3)
A 		13.4
(0.6)
A 		20.5
(3)
P 		9.7
(-0.7)
A 		2.9
(-3)
A 		7
(-1.6)
A 		18
B 9
(-2.6)
A 		26.7
(3)
P 		7.8
(-3)
A 		10.1
(-2.3)
P 		8.2
(-2.9)
P 		14.3
(-0.9)
A 		19
C 7.3
(-2.4)
A 		15.6
(3)
P 		6.3
(-3)
A 		9.6
(-0.9)
M 		13
(1.3)
P 		11.4
(0.3)
P 		9
avr 9
(-2.4) 		18.6
(3) 		11.5
(-1) 		9.8
(-2) 		8
(-3) 		10.9
(-1.4) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186798_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4704
Sequence Type Exemplar sequence
Representative Public ID Y51H7BR.6 NCBI
Target Description Y51H7BR.6 /REP_DB=WormBase Gene ID /WP=CE25375 /TR=Q9N3K2 /GB=AAF60749.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y51H7BR.6 ENSEMBL cdna:pseudogene chromosome:CEL140:II:1520390:1521848:-1 gene:Y51H7BR.6 None
GENEFINDER00000028998 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1516599:1525412:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1520057-1521847(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y51H7BR.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL05589 Hypothetical protein Y51H7BM.1 [Caenorhabditis elegans] ref|NP_493983.3| Y51H7BM.1 [Caenorhabditis elegans] 3.0E-71
blast AAF60750 Hypothetical protein Y51H7BR.7 [Caenorhabditis elegans] ref|NP_493985.1| Y51H7BR.7 [Caenorhabditis elegans] 9.0E-60
blast CAE62890 Hypothetical protein CBG07077 [Caenorhabditis briggsae] 5.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 8.1E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000028998 8 55-77,232-254,284-306,313-335,340-362,369-391,422-444,465-487
Sequence
Target Sequence 
>C. ELEGANS:186798_AT
tggacgttccttttcagtatggcgcgattattttgacaactgagtttgtcattggaaatg
gagctcaaataattggtgggctcattttctcaactttaattataattttaattgtccttc
tgtgtggaatagtaattttcaaggtgcatcgtcttcgaaaattaagccaggctctcaaca
caactcaaaggaaatctgcggaaagaactcttacagtaaccactattatcattattgtac
cattaataatgacacaaattttagcggcctgcagcttaaacccgtcgagcttaaccggat
acgtcattttgctccgcccactttttatcgattgccgtgtaaatatcgtaatttttattt
cccaattaaaaaaatttttgaagcaaattatggattgtaggtcattctctcggcatgaca
tctttcataaaataagtccaataaatcatcatcgatttctccaagcaatatgcctctctg
ctgaatttctcggaacgggcggagcagacctggaaattcgatttttttttattttttcga
aaaatttttacgcagtcagcaggattcgaacctacgcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGACGTTCCTTTTCAGTATGGCGC 417 543 557 Antisense
ATTGGTGGGCTCATTTTCTCAACTT 196 5 628 Antisense
ATTAAGCCAGGCTCTCAACACAACT 380 9 717 Antisense
GACACAAATTTTAGCGGCCTGCAGC 128 367 807 Antisense
ACCGGATACGTCATTTTGCTCCGCC 355 87 850 Antisense
GCCCACTTTTTATCGATTGCCGTGT 36 287 872 Antisense
TGGATTGTAGGTCATTCTCTCGGCA 579 549 947 Antisense
ATCATCATCGATTTCTCCAAGCAAT 3 31 1001 Antisense
CTCCAAGCAATATGCCTCTCTGCTG 226 237 1015 Antisense
CTCTCTGCTGAATTTCTCGGAACGG 275 231 1030 Antisense
GTCAGCAGGATTCGAACCTACGCGG 38 465 1111 Antisense
Sequence Source Affymetrix Proprietary Database