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[186797_s_at]

Description T24E12.11 /REP_DB=WormBase Gene ID /WP=CE17268 /TR=O44883 /GB=AAB95045.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 8
(-3)
A 		44.7
(-0.4)
A 		14
(-2.6)
A 		91.8
(3)
A 		84
B 37.4
(3)
A 		24.6
(-0.2)
A 		13.4
(-3)
A 		17.7
(-1.9)
A 		24
C 36.4
(2.2)
A 		4.1
(-3)
A 		41.7
(3)
A 		36.5
(2.2)
A 		38
avr 27.3
(-2) 		24.5
(-2.6) 		23
(-3) 		48.7
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 97.2
(3)
M 		7.1
(-3)
A 		51.8
(-0)
P 		8.1
(-2.9)
A 		36.5
(-1)
A 		13.9
(-2.5)
A 		90
B 39.4
(0)
P 		16.7
(-2.5)
A 		66.3
(3)
A 		42.2
(0.4)
A 		25.1
(-1.5)
A 		11.7
(-3)
A 		55
C 43.7
(1.1)
A 		53.5
(2.3)
A 		50.8
(2)
A 		58.8
(3)
A 		10.8
(-3)
A 		13.4
(-2.7)
A 		48
avr 60.1
(3) 		25.8
(-1.4) 		56.3
(2.5) 		36.4
(-0) 		24.1
(-1.6) 		13
(-3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.9
(-3)
A 		9.7
(0.9)
A 		3.7
(-2.5)
A 		13.4
(3)
A 		11
B 11.9
(3)
A 		6.1
(-1)
A 		3.1
(-3)
A 		3.8
(-2.5)
A 		9
C 12
(1.9)
A 		1.2
(-3)
A 		14.5
(3)
A 		6.2
(-0.7)
A 		13
avr 8.9
(3) 		5.7
(-3) 		7.1
(-0.4) 		7.8
(0.9) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 17.9
(3)
M 		2.5
(-2.8)
A 		11.3
(0.5)
P 		2.1
(-3)
A 		11
(0.4)
A 		3.4
(-2.5)
A 		16
B 13.7
(1.8)
P 		5.6
(-2.4)
A 		16.1
(3)
A 		11.2
(0.5)
A 		10.2
(-0)
A 		4.4
(-3)
A 		12
C 16.2
(3)
A 		16.3
(3)
A 		12.9
(1.4)
A 		11.8
(0.9)
A 		3.5
(-3)
A 		4.5
(-2.5)
A 		13
avr 15.9
(3) 		8.1
(-1) 		13.4
(1.7) 		8.4
(-0.8) 		8.2
(-0.9) 		4.1
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186797_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5742
Sequence Type Exemplar sequence
Representative Public ID T24E12.11 NCBI
Target Description T24E12.11 /REP_DB=WormBase Gene ID /WP=CE17268 /TR=O44883 /GB=AAB95045.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062247(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062247 NCBI Caenorhabditis elegans T24E12.11 (T24E12.11) mRNA, complete cds. 11/11 None
SNAP00000005576 ENSEMBL cdna:SNAP chromosome:CEL140:II:3778580:3779549:-1 11/11 None
GENEFINDER00000005585 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3778580:3779549:-1 11/11 None
T24E12.11 ENSEMBL cdna:known chromosome:CEL140:II:3778400:3779549:-1 gene:T24E12.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3778578-3779548(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T24E12.11
Entrez Gene 173722 Entrez gene
SwissProt O44883 EMBL-EBI
WormBase CE17268 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB95045 Hypothetical protein T24E12.11 [Caenorhabditis elegans] ref|NP_494648.1| T24E12.11 [Caenorhabditis elegans] 9.0E-90
Sequence
Target Sequence 
>C. ELEGANS:186797_S_AT
gcagcagtgcaaatgttctacgggcaacaacttggcttcccagctgctccgatgacacct
catccatactcaatcccagaggcgctattcaacatgagcccggattatggattgaacagt
gggttgccaagcttggggagctctgcgctgtattgtgccactccagttgaggatgctgat
gcatttgacaccagcttggaatcgacagaatcctcgattgctacgacagagcagcaacaa
gaatttactgtgccggagcaacaacaatcggaagctcttgctaagctgcatgaaaagttt
gatgaagacacctccggttacacgccactggacctgctagccgctgtcgcaaaatatgag
gagaccatcgaagattttgtctttgatgacgctccccaaatgaaaaggatcgtcgaaaac
ggaatcccattcgatcaagaatttcaggattgggaagacgtgccaaaagaagaacaagtc
cggcgcgtccaagtcttcaaggaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGCAGTGCAAATGTTCTACGGGC 461 313 64 Antisense
TACGGGCAACAACTTGGCTTCCCAG 10 647 82 Antisense
TCCATACTCAATCCCAGAGGCGCTA 329 591 126 Antisense
GGCGCTATTCAACATGAGCCCGGAT 198 543 144 Antisense
TTGCCAAGCTTGGGGAGCTCTGCGC 584 701 187 Antisense
GTGCCACTCCAGTTGAGGATGCTGA 458 477 218 Antisense
GATGCATTTGACACCAGCTTGGAAT 686 411 241 Antisense
GAATCCTCGATTGCTACGACAGAGC 677 327 271 Antisense
TGATGAAGACACCTCCGGTTACACG 129 567 363 Antisense
GATTTTGTCTTTGATGACGCTCCCC 223 427 436 Antisense
CGGCGCGTCCAAGTCTTCAAGGACA 45 243 544 Antisense
Sequence Source Affymetrix Proprietary Database