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[186796_at]

Description ZK892.6 /REP_DB=WormBase Gene ID /WP=CE01728 /TR=SW:Q09619 /GB=CAA88568.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 49      4grp_total > 60      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 52.9
(0.9)
A 		40.4
(-0.5)
A 		71.6
(3)
A 		18.8
(-3)
A 		53
B 63.7
(1.8)
A 		75.4
(3)
P 		73.9
(2.8)
A 		17.7
(-3)
A 		58
C 64.4
(-3)
A 		71.7
(-0.7)
A 		83.2
(3)
A 		65
(-2.8)
A 		19
avr 60.3
(0.7) 		62.5
(1.1) 		76.2
(3) 		33.8
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 71.3
(0.9)
A 		49.3
(-2.1)
M 		59.2
(-0.7)
A 		42.8
(-3)
A 		77.5
(1.8)
A 		86.4
(3)
A 		44
B 72.4
(3)
A 		62
(0.3)
A 		56.4
(-1.1)
A 		49
(-3)
A 		51
(-2.5)
A 		53.7
(-1.8)
A 		23
C 40.6
(-3)
A 		83.7
(3)
A 		56.1
(-0.8)
A 		60.8
(-0.2)
A 		47.2
(-2.1)
A 		62.3
(0)
M 		43
avr 61.4
(0.8) 		65
(2.1) 		57.2
(-0.7) 		50.9
(-3) 		58.6
(-0.2) 		67.5
(3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 19.3
(3)
A 		8.8
(-0.8)
A 		18.7
(2.8)
A 		2.8
(-3)
A 		17
B 20.3
(3)
A 		18.6
(2.4)
P 		17.1
(1.8)
A 		3.8
(-3)
A 		17
C 21.3
(0.4)
A 		20.6
(0.2)
A 		29
(3)
A 		11
(-3)
A 		18
avr 20.3
(2.5) 		16
(0.9) 		21.6
(3) 		5.9
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 13.2
(-1.9)
A 		17.5
(0.2)
M 		12.9
(-2)
A 		10.8
(-3)
A 		23.4
(3)
A 		21
(1.9)
A 		13
B 25.2
(3)
A 		20.6
(0.7)
A 		13.7
(-2.7)
A 		13
(-3)
A 		20.7
(0.8)
A 		20
(0.4)
A 		12
C 15
(-1.7)
A 		25.5
(3)
A 		14.3
(-2.1)
A 		12.2
(-3)
A 		15.3
(-1.6)
A 		20.9
(0.9)
M 		13
avr 17.8
(0.8) 		21.2
(3) 		13.6
(-2) 		12
(-3) 		19.8
(2.1) 		20.6
(2.6) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186796_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3870
Sequence Type Exemplar sequence
Representative Public ID ZK892.6 NCBI
Target Description ZK892.6 /REP_DB=WormBase Gene ID /WP=CE01728 /TR=SW:Q09619 /GB=CAA88568.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063756(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063756 NCBI Caenorhabditis elegans ZK892.6 (ZK892.6) mRNA, complete cds. 11/11 None
SNAP00000002390 ENSEMBL cdna:SNAP chromosome:CEL140:II:9979073:9979987:-1 11/11 None
ZK892.6 ENSEMBL cdna:known chromosome:CEL140:II:9979073:9979987:-1 gene:ZK892.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000002400 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9979069-9979984(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK892.6
Entrez Gene 191447 Entrez gene
SwissProt Q09619 EMBL-EBI
WormBase CE01728 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88568 Hypothetical protein ZK892.6 [Caenorhabditis elegans] ref|NP_496157.1| ZK892.6 [Caenorhabditis elegans] sp|Q09619|YS76_CAEEL Hypothetical protein ZK892.6 in chromosome III 1.0E-143
blast CAB02964 Hypothetical protein F16B12.6 [Caenorhabditis elegans] ref|NP_510349.2| F16B12.6 [Caenorhabditis elegans] 2.0E-44
blast CAE60312 Hypothetical protein CBG03903 [Caenorhabditis briggsae] 2.0E-25
Sequence
Target Sequence 
>C. ELEGANS:186796_AT
gcaaatattgcccattcattctacctgccggaattgctaatgatgggactttctacctga
agctggattcaaagttttggaacgacagctattggcagctaaaatatctggttaaccagt
cggacttaatagaagaaattggatgcctcaacacgcaagtaccagaagctccaccatttt
ggaaaaggcatatttgccttttttttgtagatggaaaggatgttaccttctgtttactgg
caacagacaaagtgggaccgtggtctgatattgaagagacatcagctccgcttcgctttg
actaccacaaccatctgagagtctgcgtgagaaaagacaccatccaggaatttcaattat
gcacaatggacagtactttgctgtcatgtccacgactccgcaaaaaatatatgttcaaag
gagcgggaaacaatatggacatggcctgcttgtgtataattacactgagtgtggagaagc
tccatcagttgtgcaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAATATTGCCCATTCATTCTACC 315 317 152 Antisense
TTCATTCTACCTGCCGGAATTGCTA 422 689 166 Antisense
ATGGGACTTTCTACCTGAAGCTGGA 65 51 194 Antisense
TGGATGCCTCAACACGCAAGTACCA 18 551 291 Antisense
AGTACCAGAAGCTCCACCATTTTGG 560 61 309 Antisense
GGATGTTACCTTCTGTTTACTGGCA 161 515 369 Antisense
TTGAAGAGACATCAGCTCCGCTTCG 15 705 422 Antisense
ACCACAACCATCTGAGAGTCTGCGT 117 85 455 Antisense
AGTACTTTGCTGTCATGTCCACGAC 25 63 523 Antisense
TATGGACATGGCCTGCTTGTGTATA 436 655 585 Antisense
GAGAAGCTCCATCAGTTGTGCAATC 122 393 625 Antisense
Sequence Source Affymetrix Proprietary Database