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[186795_at]

Description Y116F11A.4 /REP_DB=WormBase Gene ID /WP=CE24157 /TR=Q9U3T2 /GB=CAB60762.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 20      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 11.7
(-3)
A 		43.2
(-0.6)
A 		43.6
(-0.5)
A 		88.9
(3)
A 		77
B 40.2
(1.9)
A 		45.9
(3)
A 		34.4
(0.8)
A 		13.9
(-3)
A 		32
C 57
(3)
A 		14.2
(-2.2)
A 		7.7
(-3)
A 		39.4
(0.9)
A 		49
avr 36.3
(-0.5) 		34.4
(-1.1) 		28.6
(-3) 		47.4
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 49.8
(-0.7)
A 		40.1
(-1.7)
A 		85.7
(3)
A 		27.3
(-3)
A 		42.7
(-1.4)
A 		50.3
(-0.6)
A 		58
B 29.9
(-1.2)
A 		33.2
(-0.8)
A 		60.5
(3)
A 		57
(2.5)
A 		58.2
(2.7)
A 		17
(-3)
A 		44
C 31.6
(-3)
A 		31.2
(-3)
A 		51
(-1.2)
A 		97.3
(3)
A 		43.4
(-1.9)
A 		47.3
(-1.5)
A 		66
avr 37.1
(-2.6) 		34.8
(-3) 		65.7
(3) 		60.5
(2) 		48.1
(-0.4) 		38.2
(-2.3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 4.3
(-3)
A 		9.4
(0.5)
A 		11.4
(1.9)
A 		13
(3)
A 		9
B 12.8
(3)
A 		11.3
(2.1)
A 		8
(0.1)
A 		3
(-3)
A 		10
C 18.9
(3)
A 		4.1
(-2.5)
A 		2.7
(-3)
A 		6.6
(-1.6)
A 		16
avr 12
(3) 		8.3
(-1.8) 		7.4
(-3) 		7.5
(-2.9) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 9.2
(-1.8)
A 		14.3
(0.8)
A 		18.7
(3)
A 		6.9
(-3)
A 		12.9
(0.1)
A 		12.2
(-0.3)
A 		12
B 10.4
(-1.6)
A 		11.1
(-1.3)
A 		14.7
(-0.1)
A 		15.1
(0)
A 		23.7
(3)
A 		6.3
(-3)
A 		17
C 11.7
(-1.7)
A 		9.5
(-3)
A 		13
(-0.9)
A 		19.6
(3)
A 		14
(-0.3)
A 		15.8
(0.7)
A 		10
avr 10.4
(-3) 		11.6
(-1.9) 		15.5
(1.7) 		13.9
(0.2) 		16.9
(3) 		11.4
(-2.1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186795_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13227
Sequence Type Exemplar sequence
Representative Public ID Y116F11A.4 NCBI
Target Description Y116F11A.4 /REP_DB=WormBase Gene ID /WP=CE24157 /TR=Q9U3T2 /GB=CAB60762.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000017817 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19727036:19733073:1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039466 2/11 Cross Hyb Matching Probes None
Y51A2A.2 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19731408-19733073(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60760 Hypothetical protein Y116F11A.1 [Caenorhabditis elegans] ref|NP_507820.1| Y116F11A.1 [Caenorhabditis elegans] 7.0E-87
blast CAA94112 Hypothetical protein C11G6.2 [Caenorhabditis elegans] ref|NP_510656.1| C11G6.2 [Caenorhabditis elegans] 2.0E-69
blast CAB60761 Hypothetical protein Y116F11A.3 [Caenorhabditis elegans] ref|NP_507819.1| Y116F11A.3 [Caenorhabditis elegans] 4.0E-48
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000017817 1 160-182
Sequence
Target Sequence 
>C. ELEGANS:186795_AT
cctacaccaatctcaaattctcactagcctcatcaactggcgaaaagtactcctggacaa
gaaccaccttcggatggaagttcgaacgggacgatgtaactgttgtttgcatgaaacgca
taaatactgaaagcgcatcattaaataatactaactcggaatgcgaagagcaaaatgcag
tgcggacaggaatcgcgtcgattgaggaatatacatggatgaaagggctaacattacttg
gattagcaattggtggagagagaaattgcccgacaactccgtgcacaactttccgatgga
ctgatggctacacaacttccacgacttttcacaattcaacctatgcagaattagagtcgt
ttccaaactccgagccgtacaattgcttaactatacggaacaaaaattccccagcaataa
ttgacaaagaaatcatcgcccaacttgtcagcttaccagcagaccaaatcattaaatttt
cgatcgcagccatttcagaaaacgaggagatgtattttgttgttattagagctaccggaa
ttacaccatcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTACACCAATCTCAAATTCTCACT 438 267 323 Antisense
TTCTCACTAGCCTCATCAACTGGCG 532 691 340 Antisense
AGTGCGGACAGGAATCGCGTCGATT 156 61 501 Antisense
CTCCGTGCACAACTTTCCGATGGAC 44 235 599 Antisense
GACTGATGGCTACACAACTTCCACG 640 375 621 Antisense
AACTTCCACGACTTTTCACAATTCA 448 139 636 Antisense
TAGAGTCGTTTCCAAACTCCGAGCC 25 653 674 Antisense
AAAGAAATCATCGCCCAACTTGTCA 258 123 748 Antisense
AACTTGTCAGCTTACCAGCAGACCA 334 139 764 Antisense
ATTTTCGATCGCAGCCATTTCAGAA 291 15 798 Antisense
GAGCTACCGGAATTACACCATCACC 447 387 851 Antisense
Sequence Source Affymetrix Proprietary Database