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[186794_s_at]

Description Y46G5A.22B /REP_DB=WormBase Gene ID /WP=CE24295 /TR=Q9U2E7 /GB=CAB60365.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 1.5
(-3)
A 		17.3
(-1.5)
A 		20.7
(-1.1)
A 		62.7
(3)
A 		61
B 4.2
(-2.7)
A 		7.4
(-1.4)
A 		3.4
(-3)
A 		18.6
(3)
A 		15
C 25.3
(3)
A 		11.2
(-0.7)
A 		2.6
(-3)
A 		4.5
(-2.5)
A 		23
avr 10.3
(-2.6) 		12
(-2.1) 		8.9
(-3) 		28.6
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 3.8
(-2.8)
A 		5.6
(-2.6)
A 		1.5
(-3)
A 		5.3
(-2.6)
A 		7.2
(-2.5)
A 		64.6
(3)
A 		63
B 2.2
(-3)
A 		5.1
(-2.7)
A 		17.2
(-1.4)
A 		9.9
(-2.2)
A 		54.9
(2.5)
A 		59.8
(3)
P 		58
C 3.9
(-3)
A 		9.4
(-2.6)
A 		18.3
(-1.9)
A 		6.6
(-2.8)
A 		80.2
(3)
A 		48
(0.5)
P 		76
avr 3.3
(-3) 		6.7
(-2.6) 		12.3
(-2) 		7.3
(-2.6) 		47.4
(1.9) 		57.5
(3) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.5
(-3)
A 		3.8
(-0.7)
A 		5.4
(0.4)
A 		9.2
(3)
A 		9
B 1.3
(-2.1)
A 		1.8
(-1.1)
A 		0.8
(-3)
A 		4
(3)
A 		3
C 8.4
(3)
A 		3.2
(-1.1)
A 		0.9
(-2.9)
A 		0.8
(-3)
A 		8
avr 3.4
(-0.4) 		2.9
(-1.7) 		2.4
(-3) 		4.7
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 0.7
(-2.8)
A 		2
(-2.3)
A 		0.3
(-3)
A 		1.3
(-2.6)
A 		2.2
(-2.3)
A 		15.7
(3)
A 		15
B 0.8
(-3)
A 		1.7
(-2.7)
A 		4.2
(-2.1)
A 		2.6
(-2.5)
A 		22.3
(3)
A 		22.3
(3)
P 		22
C 1.5
(-3)
A 		2.9
(-2.6)
A 		4.6
(-2.2)
A 		1.3
(-3)
A 		25.9
(3)
A 		16.1
(0.6)
P 		25
avr 1
(-3) 		2.2
(-2.6) 		3
(-2.3) 		1.7
(-2.8) 		16.8
(2.6) 		18
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186794_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3361
Sequence Type Exemplar sequence
Representative Public ID Y46G5A.22B NCBI
Target Description Y46G5A.22B /REP_DB=WormBase Gene ID /WP=CE24295 /TR=Q9U2E7 /GB=CAB60365.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064326(11), NM_064325(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064326 NCBI Caenorhabditis elegans Y46G5A.22b (Y46G5A.22) mRNA, complete cds. 11/11 A 
NM_064325 NCBI Caenorhabditis elegans Y46G5A.22a (Y46G5A.22) mRNA, complete cds. 11/11 A 
SNAP00000039001 ENSEMBL cdna:SNAP chromosome:CEL140:II:12816837:12818302:-1 11/11 None
GENEFINDER00000039024 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12816837:12818444:-1 11/11 None
Y46G5A.22b ENSEMBL cdna:known chromosome:CEL140:II:12816737:12818450:-1 gene:Y46G5A.22 11/11 A 
Y46G5A.22a ENSEMBL cdna:known chromosome:CEL140:II:12816777:12818444:-1 gene:Y46G5A.22 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12816913-12818441(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y46G5A.22
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60364 Hypothetical protein Y46G5A.22a [Caenorhabditis elegans] ref|NP_496726.1| Y46G5A.22a [Caenorhabditis elegans] 1.0E-148
blast CAB60364 Hypothetical protein Y46G5A.22a [Caenorhabditis elegans] ref|NP_496726.1| Y46G5A.22a [Caenorhabditis elegans] 1.0E-143
blast CAB60365 Hypothetical protein Y46G5A.22b [Caenorhabditis elegans] ref|NP_496727.1| Y46G5A.22b [Caenorhabditis elegans] 1.0E-128
blast CAB60365 Hypothetical protein Y46G5A.22b [Caenorhabditis elegans] ref|NP_496727.1| Y46G5A.22b [Caenorhabditis elegans] 1.0E-121
blast CAB60364 Hypothetical protein Y46G5A.22a [Caenorhabditis elegans] ref|NP_496726.1| Y46G5A.22a [Caenorhabditis elegans] 1.0E-117
blast CAB60365 Hypothetical protein Y46G5A.22b [Caenorhabditis elegans] ref|NP_496727.1| Y46G5A.22b [Caenorhabditis elegans] 1.0E-117
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496727.1 2 194-216,226-245
NP_496726.1 2 194-216,226-245
Y46G5A.22b 2 194-216,226-245
Y46G5A.22a 2 194-216,226-245
SNAP00000039001 2 175-197,207-226
GENEFINDER00000039024 2 194-216,226-245
Sequence
Target Sequence 
>C. ELEGANS:186794_S_AT
atatcaagtgacattcccgacggttgagctgaaattgccacgtcagagaaagcattgccg
caggcgatcgaagagacaggatcaggcacagggagagcatgtgacaatcacgaaatgtgt
tgatagaagacaagtctacggagagcccgataataagaacaccatatccgagcactctac
gtacacctactctacccatccggaacgttgctctcaggccggccgtacttctcgttcgaa
cagctattctgacgccacagatgccacatatcggactgaaaactcgcagaatcgtcttca
aactctcggcaactgtgccacgtcgattggcaactttttccgcaacaatccgagattcac
caagctcgtgttcggcatcattctgtgctacttggtggtttgcaacttggaaattctgat
tccacgtgtcattgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATCAAGTGACATTCCCGACGGTT 470 11 228 Antisense
GAAAGCATTGCCGCAGGCGATCGAA 676 359 275 Antisense
CCATATCCGAGCACTCTACGTACAC 666 269 389 Antisense
GTTCGAACAGCTATTCTGACGCCAC 471 441 461 Antisense
GCCACAGATGCCACATATCGGACTG 394 279 481 Antisense
GCAGAATCGTCTTCAAACTCTCGGC 168 313 513 Antisense
TCGGCAACTGTGCCACGTCGATTGG 622 605 533 Antisense
CACGTCGATTGGCAACTTTTTCCGC 240 199 546 Antisense
TTTTTCCGCAACAATCCGAGATTCA 180 675 562 Antisense
TGTTCGGCATCATTCTGTGCTACTT 337 563 596 Antisense
AATTCTGATTCCACGTGTCATTGCT 407 177 639 Antisense
Sequence Source Affymetrix Proprietary Database