[Home] | [Total List]

[186791_at]

Description R07B1.7 /REP_DB=WormBase Gene ID /WP=CE01633 /TR=SW:Q09421 /GB=CAA88544.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 42      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 43.9
(-3)
A 		114.3
(2.2)
A 		125.1
(3)
A 		83.5
(-0.1)
A 		81
B 56.2
(-3)
A 		126.2
(3)
A 		68.4
(-2)
A 		76.6
(-1.3)
A 		70
C 48
(-3)
A 		168.8
(3)
A 		89.8
(-0.9)
A 		59.8
(-2.4)
A 		121
avr 49.4
(-3) 		136.4
(3) 		94.4
(0.1) 		73.3
(-1.4) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 71
(0.4)
A 		92.7
(3)
A 		72.3
(0.5)
A 		70.4
(0.3)
A 		43.2
(-3)
A 		47.5
(-2.5)
A 		50
B 43.4
(-2.6)
A 		64.5
(0.7)
A 		53.4
(-1)
A 		79
(3)
A 		44.5
(-2.4)
A 		40.9
(-3)
A 		38
C 39
(-0.7)
A 		89.6
(3)
A 		39
(-0.7)
A 		70.2
(1.6)
A 		6.8
(-3)
A 		37.4
(-0.8)
A 		83
avr 51.1
(-0.7) 		82.3
(3) 		54.9
(-0.2) 		73.2
(1.9) 		31.5
(-3) 		41.9
(-1.8) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 16
(-1.9)
A 		24.8
(0.7)
A 		32.7
(3)
A 		12.2
(-3)
A 		21
B 17.9
(-2.2)
A 		31.2
(3)
A 		15.9
(-3)
A 		16.3
(-2.8)
A 		15
C 15.9
(-2.1)
A 		48.5
(3)
A 		31.3
(0.3)
A 		10.1
(-3)
A 		38
avr 16.6
(-2) 		34.8
(3) 		26.6
(0.8) 		12.9
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 13.1
(-2.6)
A 		33
(3)
A 		15.7
(-1.9)
A 		17.9
(-1.2)
A 		13
(-2.6)
A 		11.6
(-3)
A 		21
B 15.1
(-1.5)
A 		21.5
(3)
A 		13
(-3)
A 		20.9
(2.6)
A 		18.1
(0.6)
A 		15.3
(-1.4)
A 		9
C 14.4
(-0.1)
A 		27.4
(3)
A 		9.9
(-1.2)
A 		14.1
(-0.2)
A 		2.2
(-3)
A 		12.5
(-0.5)
A 		25
avr 14.2
(-1.9) 		27.3
(3) 		12.9
(-2.3) 		17.6
(-0.6) 		11.1
(-3) 		13.1
(-2.3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186791_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16099
Sequence Type Exemplar sequence
Representative Public ID R07B1.7 NCBI
Target Description R07B1.7 /REP_DB=WormBase Gene ID /WP=CE01633 /TR=SW:Q09421 /GB=CAA88544.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077254(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077254 NCBI Caenorhabditis elegans R07B1.7 (R07B1.7) mRNA, complete cds. 11/11 None
R07B1.7 ENSEMBL cdna:known chromosome:CEL140:X:9868767:9870133:1 gene:R07B1.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020693 8/11 Cross Hyb Matching Probes None
GENEFINDER00000020706 7/11 Cross Hyb Matching Probes None
GENEFINDER00000020704 2/11 Cross Hyb Matching Probes None
SNAP00000020694 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9868766-9870133(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R07B1.7
Entrez Gene 187648 Entrez gene
SwissProt Q09421 EMBL-EBI
WormBase CE01633 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88544 Hypothetical protein R07B1.7 [Caenorhabditis elegans] ref|NP_509655.1| R07B1.7 [Caenorhabditis elegans] sp|Q09421|YRN7_CAEEL Hypothetical protein R07B1.7 in chromosome X 1.0E-103
blast CAE58725 Hypothetical protein CBG01910 [Caenorhabditis briggsae] 2.0E-17
Sequence
Target Sequence 
>C. ELEGANS:186791_AT
tacaccaatgacaacttctgctccaacaactacaatgcctcgtacagtgtgccaatcttg
caccctagacgccacaactgtcataatggtgcatccttctgccaaaccattcacaagtga
cactatcgacgacacacaaacttgcgcaattcgaactttggtttgcgatgctagatcacc
tggtggagacgttctagtttcgtttaatagagatgattctggttctactggaggtccgaa
cacatttacaactatccttaattgcaatgacgatatgcaatggacattgtctggaattca
ccagccttctgcacgaatgaatcccctattcacttctgctttagttgttttagttttatt
cacaaaaagaacacatgcatgtgttgccacgtcaccaggaacagctccgactacagcagc
gccaaccggctgccaagcatgtacattggattctgtgcagcaaatcatgattagtttggg
aacgaaagctttcactagtgacactatcgataacagcggaacatgtgctatcagaacatc
ggtgtgtaacggattttctgcaggctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACACCAATGACAACTTCTGCTCCA 422 643 111 Antisense
CTACAATGCCTCGTACAGTGTGCCA 459 227 140 Antisense
CAGTGTGCCAATCTTGCACCCTAGA 508 207 155 Antisense
GTCATAATGGTGCATCCTTCTGCCA 78 467 190 Antisense
TCCTTCTGCCAAACCATTCACAAGT 697 591 204 Antisense
GATCACCTGGTGGAGACGTTCTAGT 465 421 284 Antisense
TGATTCTGGTTCTACTGGAGGTCCG 334 563 324 Antisense
GGTCCGAACACATTTACAACTATCC 665 501 343 Antisense
ACCAGCCTTCTGCACGAATGAATCC 369 85 410 Antisense
CAACCGGCTGCCAAGCATGTACATT 508 185 533 Antisense
GTGTAACGGATTTTCTGCAGGCTCA 256 487 654 Antisense
Sequence Source Affymetrix Proprietary Database