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[186789_s_at]

Description F36G3.2 /REP_DB=WormBase Gene ID /WP=CE01577 /TR=SW:Q09318 /GB=CAA87337.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 21      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 61      6grp_total > 32      4grp_total > 59      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 558
1 2 3 4 range
A 620.7
(1.2)
P 		588.2
(0.8)
P 		764.7
(3)
P 		278
(-3)
P 		487
B 514.6
(-1.8)
P 		666
(1)
P 		776.9
(3)
P 		446.2
(-3)
P 		331
C 595.8
(0.5)
P 		699.5
(1.7)
P 		824.6
(3)
P 		266.5
(-3)
P 		558
avr 577
(0.2) 		651.2
(1.2) 		788.7
(3) 		330.2
(-3) 		459

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 249
1 2 3 4 5 6 range
A 398.8
(1.7)
P 		386.6
(1.3)
P 		439.1
(3)
P 		436.7
(2.9)
P 		310.5
(-1.2)
P 		254.8
(-3)
P 		184
B 410.1
(0.7)
P 		421.2
(1)
P 		503.8
(3)
P 		438
(1.4)
P 		370.5
(-0.2)
P 		256.9
(-3)
P 		247
C 451.8
(3)
P 		368.2
(-0.7)
P 		390.3
(0.3)
P 		368.5
(-0.7)
P 		315.3
(-3)
P 		335.6
(-2.1)
P 		137
avr 420.2
(2.1) 		392
(1.1) 		444.4
(3) 		414.4
(1.9) 		332.1
(-1.2) 		282.4
(-3) 		162
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 247
1 2 3 4 range
A 226
(3)
P 		127.7
(-0.2)
P 		199.9
(2.2)
P 		40.7
(-3)
P 		185
B 164.1
(1.9)
P 		164.5
(1.9)
P 		180
(3)
P 		95.1
(-3)
P 		85
C 197.2
(0.8)
P 		201.1
(0.9)
P 		287.4
(3)
P 		44.9
(-3)
P 		243
avr 195.8
(2) 		164.4
(0.9) 		222.4
(3) 		60.2
(-3) 		162

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 73.5
(-2.1)
P 		137.5
(3)
P 		95.6
(-0.3)
P 		110.8
(0.9)
P 		93.7
(-0.5)
P 		62
(-3)
P 		76
B 142.7
(2.1)
P 		140.2
(1.9)
P 		122.3
(-0.1)
P 		116
(-0.8)
P 		150.5
(3)
P 		95.8
(-3)
P 		55
C 167.5
(3)
P 		112.3
(-0.5)
P 		99.3
(-1.4)
P 		74.1
(-3)
P 		102
(-1.2)
P 		112.3
(-0.5)
P 		93
avr 127.9
(2.7) 		130
(3) 		105.7
(-0.6) 		100.3
(-1.5) 		115.4
(0.8) 		90
(-3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186789_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16966
Sequence Type Exemplar sequence
Representative Public ID F36G3.2 NCBI
Target Description F36G3.2 /REP_DB=WormBase Gene ID /WP=CE01577 /TR=SW:Q09318 /GB=CAA87337.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077242(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077242 NCBI Caenorhabditis elegans F36G3.2 (F36G3.2) mRNA, complete cds. 11/11 None
SNAP00000015722 ENSEMBL cdna:SNAP chromosome:CEL140:X:9792640:9794196:-1 11/11 None
GENEFINDER00000015727 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9792640:9794196:-1 11/11 None
F36G3.2.2 ENSEMBL cdna:known chromosome:CEL140:X:9792333:9794204:-1 gene:F36G3.2 11/11 None
F36G3.2.1 ENSEMBL cdna:known chromosome:CEL140:X:9792333:9794204:-1 gene:F36G3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9792639-9794196(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36G3.2
Entrez Gene 181192 Entrez gene
SwissProt Q09318 EMBL-EBI
WormBase CE01577 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87337 Hypothetical protein F36G3.2 [Caenorhabditis elegans] ref|NP_509643.1| F36G3.2 [Caenorhabditis elegans] sp|Q09318|YQY2_CAEEL Hypothetical protein F36G3.2 in chromosome X 0.0
blast CAE58712 Hypothetical protein CBG01897 [Caenorhabditis briggsae] 1.0E-163
Protein Domains
Database ID Description E-Value
Pfam IPR000182 EMBL-EBI GCN5-related N-acetyltransferase 5.0E-5
Sequence
Target Sequence 
>C. ELEGANS:186789_S_AT
ccgatcacacactgggactacgaggagtacccagcatggttgacaagtacagaaagaaag
caacgccgtttgtcggagcaacgctcgaaaactacaaaatgaaggtggccgaatatcacg
cgtctatggaaaaaatgacaggagacaacttcaaactcgttagtcatttgacgcctgtcg
aatttgaccaactggtgcgatacgatagtgatgtcaacggtagaaaccgccgagaattcc
tggaactctattataagctggactgtgtgctcggagtcgtgctctttgaccagcatcata
aaatcattgctcatatttctgctgtccgcacttcgcacaaagaagacaacgtattcaaga
ttgcgccattgtatgctgattctccaagcattgccatgtcagcacttcgcgtgttctctg
gagtgatgttcgaattgcatccggaagcggacgtcttgttccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGATCACACACTGGGACTACGAGG 4 265 326 Antisense
GACTACGAGGAGTACCCAGCATGGT 489 371 341 Antisense
CAACGCCGTTTGTCGGAGCAACGCT 385 187 386 Antisense
GAAGGTGGCCGAATATCACGCGTCT 95 335 426 Antisense
GACGCCTGTCGAATTTGACCAACTG 284 381 495 Antisense
GAAACCGCCGAGAATTCCTGGAACT 693 357 548 Antisense
TCATTGCTCATATTTCTGCTGTCCG 495 619 629 Antisense
TGCGCCATTGTATGCTGATTCTCCA 344 585 687 Antisense
CAAGCATTGCCATGTCAGCACTTCG 642 185 710 Antisense
ACTTCGCGTGTTCTCTGGAGTGATG 655 101 729 Antisense
TCCGGAAGCGGACGTCTTGTTCCAC 423 591 765 Antisense
Sequence Source Affymetrix Proprietary Database