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[186787_s_at]

Description Y111B2A.16 /REP_DB=WormBase Gene ID /WP=CE24137 /TR=Q9NEW8 /GB=CAC35845.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 50      6grp_cgc > 48      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 68.4
(-1.6)
P 		116.5
(3)
A 		102.1
(1.6)
A 		53.5
(-3)
A 		63
B 59.9
(-1.5)
M 		153
(3)
A 		132.8
(2)
A 		29.1
(-3)
A 		124
C 87.3
(-2.7)
A 		119.2
(1.6)
A 		85.4
(-3)
P 		129.8
(3)
A 		44
avr 71.9
(-2.9) 		129.6
(3) 		106.8
(0.7) 		70.8
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 244
1 2 3 4 5 6 range
A 60.6
(-2.2)
A 		82.6
(-0.9)
A 		141
(2.6)
A 		46.6
(-3)
A 		70.3
(-1.6)
A 		147.9
(3)
P 		101
B 28.1
(-3)
A 		66.1
(-1.9)
A 		41.2
(-2.6)
A 		81.8
(-1.4)
A 		113.4
(-0.5)
A 		230.5
(3)
P 		202
C 80.4
(-2.6)
A 		97.1
(-2.1)
A 		110.4
(-1.7)
A 		124.1
(-1.3)
M 		66.7
(-3)
P 		271.7
(3)
P 		205
avr 56.4
(-3) 		81.9
(-2) 		97.5
(-1.5) 		84.2
(-2) 		83.5
(-2) 		216.7
(3) 		160
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 24.9
(2.4)
P 		25.3
(2.6)
A 		26.7
(3)
A 		7.8
(-3)
A 		19
B 19.1
(-0.6)
M 		37.8
(3)
A 		30.8
(1.7)
A 		6.2
(-3)
A 		32
C 28.9
(0.4)
A 		34.3
(3)
A 		29.7
(0.8)
P 		21.9
(-3)
A 		12
avr 24.3
(0.6) 		32.5
(3) 		29.1
(2) 		12
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 11.2
(-3)
A 		29.4
(1.4)
A 		30.7
(1.7)
A 		11.8
(-2.9)
A 		21.2
(-0.6)
A 		36
(3)
P 		25
B 9.8
(-3)
A 		22
(-2)
A 		10
(-3)
A 		21.7
(-2.1)
A 		46.1
(-0.1)
A 		86
(3)
P 		76
C 29.8
(-2.3)
A 		29.6
(-2.3)
A 		28.1
(-2.4)
A 		25
(-2.7)
M 		21.6
(-3)
P 		91
(3)
P 		69
avr 16.9
(-3) 		27
(-1.9) 		22.9
(-2.3) 		19.5
(-2.7) 		29.6
(-1.6) 		71
(3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186787_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7050
Sequence Type Exemplar sequence
Representative Public ID Y111B2A.16 NCBI
Target Description Y111B2A.16 /REP_DB=WormBase Gene ID /WP=CE24137 /TR=Q9NEW8 /GB=CAC35845.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067246(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067246 NCBI Caenorhabditis elegans TAF (TBP-associated transcription factor) family member (taf-7.2) (taf-7.2) mRNA, complete cds. 11/11 None
SNAP00000006166 ENSEMBL cdna:SNAP chromosome:CEL140:III:12671413:12686174:-1 11/11 None
GENEFINDER00000006290 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12671413:12673290:-1 11/11 None
Y111B2A.16 ENSEMBL cdna:known chromosome:CEL140:III:12671269:12673298:-1 gene:Y111B2A.16 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12671408-12673286(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol taf-7.2
Ensembl Y111B2A.16
Entrez Gene 176686 Entrez gene
SwissProt Q9NEW8 EMBL-EBI
WormBase CE24137 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.20819.1.S1_AT similar to TATA box-binding protein-associated factor 2F cfa
CANINE_2:CFAAFFX.974.1.S1_AT similar to TATA box-binding protein-associated factor 2F cfa
DROSOPHILA_2:1640551_AT TBP-associated factor 7 dm
DROSGENOME1:154051_AT TBP-associated factor 7 dm
CHICKEN:GGA.11818.1.S1_A_AT TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa gga
HG-U95AV2:192_AT TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa hs
HC-G110:192_AT TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa hs
HG-U133_PLUS_2:201023_AT TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa hs
HG-U133A:201023_AT TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa hs
HG-FOCUS:201023_AT TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa hs
HG-U133A_2:201023_AT TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa hs
HU35KSUBC:RC_T47333_S_AT TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa hs
HUGENEFL:U18062_AT TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa hs
U133_X3P:G5032148_3P_AT TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa hs
MG-U74BV2:106016_AT TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor mm
MG-U74CV2:170796_I_AT TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor mm
MG-U74CV2:169299_F_AT TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor mm
MOE430A:1423170_AT TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor mm
MOUSE430A_2:1423170_AT TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor mm
MOUSE430_2:1423170_AT TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor mm
MOE430A:1423169_AT TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor mm
MOUSE430A_2:1423169_AT TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor mm
MOUSE430_2:1423169_AT TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor mm
MOE430B:1441982_AT TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor mm
MOUSE430_2:1441982_AT TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor mm
RAE230B:1379735_AT TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa (predicted) rn
RAT230_2:1379735_AT TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa (predicted) rn
YEAST_2:1769698_AT TFIID subunit (67 kDa), involved in RNA polymerase II transcription initiation Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
45449 regulation of transcription inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC35845 Hypothetical protein Y111B2A.16 [Caenorhabditis elegans] ref|NP_499647.1| TAF (TBP-associated transcription factor) family member (taf-7.2) [Caenorhabditis elegans] 1.0E-107
blast CAC35845 Hypothetical protein Y111B2A.16 [Caenorhabditis elegans] ref|NP_499647.1| TAF (TBP-associated transcription factor) family member (taf-7.2) [Caenorhabditis elegans] 3.0E-97
blast CAE60049 Hypothetical protein CBG03561 [Caenorhabditis briggsae] 8.0E-77
blast CAE60049 Hypothetical protein CBG03561 [Caenorhabditis briggsae] 3.0E-71
blast CAA91754 Hypothetical protein F54F7.1 [Caenorhabditis elegans] ref|NP_509976.1| TAF (TBP-associated transcription factor) family member (taf-7.1) [Caenorhabditis elegans] 2.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR006751 EMBL-EBI TAFII55 protein conserved region 1.8E-100
Pfam IPR006751 EMBL-EBI TAFII55 protein conserved region 1.8E-100
Sequence
Target Sequence 
>C. ELEGANS:186787_S_AT
gacgatccaccagacttcgaaagtcacattgtactacgtgtacctgaagattgtgtgggt
agaatcgagaaaatcattcaatcggacggaaaacacgaggaattctcgttaaatttgaat
tcagacgctcgaaattccacagtcagaatcggaaatcaactgttaaatggaaaaatcctg
gatcttcccactataacagaaatccacaagacattagacaacaaaagcctgtataaagtc
gcagatgtctcacagatccttgtctgcacccatgattccatcaattcaatagcttcaagc
tctgaagatgctgctcagaaagcagcagcggcaaaggcaaaacaatggcaatacccgcac
ggactgacgcctcccatgaaatcggcgaggaagaagcgatttcgaaagactaagaagaaa
aagtttatggatgctccagaggttgagaaggagctcaagagactgctccgtgcagatttg
gaagcggatagtgtgaaatgggaaattgtggaagggaataaggaaggtgcgacggatgaa
gtaaggacgcagcggcatgtcacttatccatcaagtag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGATCCACCAGACTTCGAAAGTC 323 377 100 Antisense
GTCACATTGTACTACGTGTACCTGA 42 465 122 Antisense
AAAAATCCTGGATCTTCCCACTATA 645 129 270 Antisense
AAGTCGCAGATGTCTCACAGATCCT 623 157 335 Antisense
GATTCCATCAATTCAATAGCTTCAA 676 433 373 Antisense
TTCAAGCTCTGAAGATGCTGCTCAG 243 683 393 Antisense
CAATGGCAATACCCGCACGGACTGA 12 183 442 Antisense
GACGCCTCCCATGAAATCGGCGAGG 30 381 465 Antisense
GAGACTGCTCCGTGCAGATTTGGAA 437 393 558 Antisense
AAGGACGCAGCGGCATGTCACTTAT 282 161 642 Antisense
GGCATGTCACTTATCCATCAAGTAG 588 535 653 Antisense
Sequence Source Affymetrix Proprietary Database