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[186786_s_at]

Description ZK1248.12 /REP_DB=WormBase Gene ID /WP=CE02896 /TR=Q23421 /GB=AAC71093.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 95      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_highest_nonorm > 84      6grp_total > 86      4grp_total > 30      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 328
1 2 3 4 range
A 693.6
(3)
P 		463.4
(-2.3)
P 		432.2
(-3)
P 		542.1
(-0.5)
P 		261
B 686.9
(3)
P 		472.1
(-2.8)
P 		464.5
(-3)
P 		556
(-0.5)
P 		222
C 719.2
(3)
P 		463
(-1.7)
P 		391.4
(-3)
P 		652.3
(1.8)
P 		328
avr 699.9
(3) 		466.2
(-2.2) 		429.4
(-3) 		583.5
(0.4) 		271

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 473
1 2 3 4 5 6 range
A 645
(-0.9)
P 		559.8
(-3)
P 		586.3
(-2.4)
P 		808.6
(3)
P 		645.6
(-0.9)
P 		762.2
(1.9)
P 		249
B 491.2
(-2.7)
P 		475.6
(-2.9)
P 		470.9
(-3)
P 		524.3
(-2.2)
P 		606.3
(-1)
P 		876.1
(3)
P 		405
C 412.5
(-3)
P 		565
(-1.1)
P 		613.1
(-0.5)
P 		710.4
(0.8)
P 		735.4
(1.1)
P 		885.9
(3)
P 		473
avr 516.2
(-3) 		533.5
(-2.7) 		556.8
(-2.3) 		681.1
(0) 		662.4
(-0.3) 		841.4
(3) 		325
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 252.5
(3)
P 		100.6
(-2.3)
P 		113
(-1.8)
P 		79.4
(-3)
P 		173
B 219
(3)
P 		116.6
(-2.5)
P 		107.6
(-3)
P 		118.5
(-2.4)
P 		111
C 238.1
(3)
P 		133.1
(-1.9)
P 		136.4
(-1.8)
P 		110
(-3)
P 		128
avr 236.5
(3) 		116.8
(-2.4) 		119
(-2.3) 		102.6
(-3) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 118.9
(-3)
P 		199.1
(2.6)
P 		127.7
(-2.4)
P 		205.1
(3)
P 		194.8
(2.3)
P 		185.6
(1.6)
P 		86
B 170.9
(-1.4)
P 		158.3
(-1.8)
P 		114.4
(-3)
P 		138.9
(-2.3)
P 		246.3
(0.7)
P 		326.7
(3)
P 		212
C 152.9
(-2.6)
P 		172.4
(-1.8)
P 		156
(-2.5)
P 		142.9
(-3)
P 		238
(0.7)
P 		296.6
(3)
P 		154
avr 147.6
(-2.3) 		176.6
(-1.1) 		132.7
(-3) 		162.3
(-1.7) 		226.4
(1.1) 		269.6
(3) 		137
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186786_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5062
Sequence Type Exemplar sequence
Representative Public ID ZK1248.12 NCBI
Target Description ZK1248.12 /REP_DB=WormBase Gene ID /WP=CE02896 /TR=Q23421 /GB=AAC71093.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062757(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062757 NCBI Caenorhabditis elegans ZK1248.13 (ZK1248.13) mRNA, complete cds. 11/11 A 
SNAP00000041378 ENSEMBL cdna:SNAP chromosome:CEL140:II:5828756:5833197:-1 11/11 None
GENEFINDER00000041392 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5828756:5830066:-1 11/11 None
ZK1248.13 ENSEMBL cdna:known chromosome:CEL140:II:5828689:5833197:-1 gene:ZK1248.13 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5828752-5830063(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1248.13
Entrez Gene 173988 Entrez gene
SwissProt Q23421 EMBL-EBI
WormBase CE33497 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC71093 Hypothetical protein ZK1248.13 [Caenorhabditis elegans] ref|NP_495158.2| ZK1248.13 [Caenorhabditis elegans] 0.0
blast T34495 hypothetical protein ZK1248.13 - Caenorhabditis elegans 0.0
blast CAE59202 Hypothetical protein CBG02513 [Caenorhabditis briggsae] 1.0E-131
blast AAC71093 Hypothetical protein ZK1248.13 [Caenorhabditis elegans] ref|NP_495158.2| ZK1248.13 [Caenorhabditis elegans] 1.0E-117
Sequence
Target Sequence 
>C. ELEGANS:186786_S_AT
gcttcattcattcgtcccgaagttattgacgtcatgaatcagtgtatgaagtttgcacac
agcgcatatcgaaccagagaattgctagttacgatggctaatgacaaagaactactatct
cgaatgaaatgtccacaatccacaatcgatgtttctctcgctcatcacaaaacgaatgca
atcgagaaaatgaatcgagcacttagaacaaaacttcgtttctttgtattcacactcgaa
caagttgtgtcacatttcagagagttgttctctgataaggttcgctatgtatttcgaacg
gcacgtgatcaaattgtgaatgcaacaagcttgaagcaggtggaaaatgcgattacagat
ggtcacaagaagctctcagatcttgttgtacgcattggaatcagacgattggttcatgaa
aatatggatatgtttatgactatgacagatgagatacggttacgatcagtctccaacacg
ttggatcttgactatttggatcgatgtgaaacaagtgttcgaattactttacaaaagctg
ctttctctacacgaagcttggggaaacgacaaagattccatatttttccatctttctgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTCATTCATTCGTCCCGAAGTTA 488 305 130 Antisense
GCACACAGCGCATATCGAACCAGAG 341 317 184 Antisense
GAAATGTCCACAATCCACAATCGAT 259 361 255 Antisense
TCCACAATCGATGTTTCTCTCGCTC 574 587 268 Antisense
GTTTCTCTCGCTCATCACAAAACGA 77 451 280 Antisense
GAGTTGTTCTCTGATAAGGTTCGCT 388 397 391 Antisense
CGCTATGTATTTCGAACGGCACGTG 478 253 412 Antisense
AGCTCTCAGATCTTGTTGTACGCAT 64 81 500 Antisense
GGTTACGATCAGTCTCCAACACGTT 316 507 587 Antisense
AGCTGCTTTCTCTACACGAAGCTTG 193 81 665 Antisense
ATTCCATATTTTTCCATCTTTCTGT 179 9 704 Antisense
Sequence Source Affymetrix Proprietary Database