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[186785_at]

Description Y111B2A.19 /REP_DB=WormBase Gene ID /WP=CE26633 /TR=Q9NEW5 /GB=CAC35848.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 61      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 8.1
(-2.7)
A 		9.1
(-2.5)
A 		47.3
(3)
A 		6
(-3)
A 		41
B 17.4
(-0.8)
A 		3.2
(-3)
A 		41.9
(3)
A 		38.5
(2.5)
A 		39
C 10.9
(-2.3)
A 		18
(-1.6)
A 		3.2
(-3)
A 		66.8
(3)
A 		64
avr 12.1
(-2.6) 		10.1
(-3) 		30.8
(1.6) 		37.1
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 5.3
(-3)
A 		8.4
(1.8)
A 		9.2
(3)
A 		7.9
(1)
A 		7.1
(-0.2)
A 		5.9
(-2.1)
A 		4
B 8.9
(-1.9)
A 		4.5
(-2.8)
A 		3.8
(-3)
A 		30.8
(3)
A 		4.1
(-2.9)
A 		8.1
(-2)
A 		27
C 5.2
(-2.9)
A 		6.5
(-2.8)
A 		48.7
(3)
A 		25.3
(-0.2)
A 		16.1
(-1.4)
A 		4.7
(-3)
A 		44
avr 6.5
(-2.9) 		6.5
(-2.9) 		20.6
(2.7) 		21.3
(3) 		9.1
(-1.8) 		6.2
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3
(-1.9)
A 		2
(-2.4)
A 		12.4
(3)
A 		0.9
(-3)
A 		12
B 5.6
(0.2)
A 		0.8
(-3)
A 		9.7
(3)
A 		8.2
(2)
A 		9
C 3.6
(-1.5)
A 		5.2
(-0.6)
A 		1.1
(-3)
A 		11.3
(3)
A 		10
avr 4.1
(-1.3) 		2.7
(-3) 		7.7
(3) 		6.8
(1.9) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1
(-3)
A 		3
(3)
A 		2
(0)
A 		2
(0)
A 		2.1
(0.3)
A 		1.4
(-1.8)
A 		2
B 3.1
(-1.2)
A 		1.5
(-2.5)
A 		0.9
(-3)
A 		8.2
(3)
A 		1.7
(-2.3)
A 		3
(-1.3)
A 		7
C 1.9
(-2.8)
A 		2
(-2.8)
A 		12.4
(3)
A 		5.1
(-1.1)
A 		5.2
(-1)
A 		1.6
(-3)
A 		11
avr 2
(-3) 		2.2
(-2.6) 		5.1
(3) 		5.1
(3) 		3
(-1.1) 		2
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186785_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7566
Sequence Type Exemplar sequence
Representative Public ID Y111B2A.19 NCBI
Target Description Y111B2A.19 /REP_DB=WormBase Gene ID /WP=CE26633 /TR=Q9NEW5 /GB=CAC35848.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067249(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067249 NCBI Caenorhabditis elegans Y111B2A.19 (Y111B2A.19) mRNA, complete cds. 11/11 None
SNAP00000006167 ENSEMBL cdna:SNAP chromosome:CEL140:III:12686762:12697449:1 11/11 None
GENEFINDER00000006284 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12688202:12695542:1 11/11 None
Y111B2A.19 ENSEMBL cdna:known chromosome:CEL140:III:12688202:12697421:1 gene:Y111B2A.19 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12688197-12694287(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y111B2A.19
Entrez Gene 190952 Entrez gene
SwissProt Q9NEW5 EMBL-EBI
WormBase CE34503 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:20137_AT transporter-related at
CANINE_2:CFAAFFX.26496.1.S1_S_AT CD19 antigen cfa
DROSOPHILA_2:1630278_S_AT spinster dm
HG-U133_PLUS_2:223173_AT spinster hs
HG-U133B:223173_AT spinster hs
HU35KSUBA:HUM_ALU_AT spinster hs
HU35KSUBB:HUM_ALU_AT spinster hs
HU35KSUBC:HUM_ALU_AT spinster hs
HU35KSUBD:HUM_ALU_AT spinster hs
HUGENEFL:HUM_ALU_AT spinster hs
HC-G110:HUM_ALU_AT spinster hs
HU35KSUBC:RC_AA278768_F_AT spinster hs
HU35KSUBD:RC_T86750_F_AT spinster hs
HU35KSUBD:RC_T67464_F_AT spinster hs
U133_X3P:G12003979_3P_AT spinster hs
HG-U95C:48729_AT spinster hs
MG-U74AV2:92622_AT RIKEN cDNA 2210013K02 gene mm
MOE430A:1431284_A_AT RIKEN cDNA 2210013K02 gene mm
MOUSE430A_2:1431284_A_AT RIKEN cDNA 2210013K02 gene mm
MOUSE430_2:1431284_A_AT RIKEN cDNA 2210013K02 gene mm
MU19KSUBB:TC27821_AT RIKEN cDNA 2210013K02 gene, mRNA (cDNA clone MGC:28700 IMAGE:4242049) mm
MU19KSUBB:TC27821_G_AT RIKEN cDNA 2210013K02 gene, mRNA (cDNA clone MGC:28700 IMAGE:4242049) mm
RG-U34B:RC_AI059164_AT similar to spinster-like protein (predicted) rn
RAE230A:1388675_AT similar to spinster-like protein (predicted) rn
RAT230_2:1388675_AT similar to spinster-like protein (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC35848 Hypothetical protein Y111B2A.19 [Caenorhabditis elegans] ref|NP_499650.2| Y111B2A.19 [Caenorhabditis elegans] 0.0
blast CAE60052 Hypothetical protein CBG03564 [Caenorhabditis briggsae] 0.0
blast CAE75396 Hypothetical protein CBG23385 [Caenorhabditis briggsae] 4.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 5.2E-7
Pfam IPR005828 EMBL-EBI General substrate transporter 5.2E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499650.2 11 61-83,95-117,122-144,151-173,183-202,234-256,281-303,324-343,358-380,393-415,430-452
Y111B2A.19 11 61-83,95-117,122-144,151-173,183-202,234-256,281-303,324-343,358-380,393-415,430-452
SNAP00000006167 12 37-59,74-96,108-130,135-157,164-186,196-215,247-269,294-316,337-356,371-393,406-428,443-465
GENEFINDER00000006284 11 61-83,95-117,122-144,151-173,183-202,235-257,282-304,325-344,359-381,394-416,431-453
Sequence
Target Sequence 
>C. ELEGANS:186785_AT
gtgtcgctacaggctcaattttatcacgagcatggagagatggtagctcaatcttccgta
atcatgccaccgaaaaagccgacgtctatatttgtgctctatcaatgttcgtggctcttc
cattcctcttctttgccatattcattgctgaatacagtacaaatggctgtctaattctca
tctatttcgccattatgtcaatgtgcctgaactggtctgtaaatgtggatgttctcatgt
acgtagtggttgcaaaccgccgggcaactgctctcgccgttcagacaatggttgcacatt
tattcggagacgcagcgagtccgtatatcattggagtactgtcagatatgttacgaggag
acgatgcatctgcagttggacacttttttgcactgcaaaaggctctatatgtaccaactt
ttatgttggtcgttgctggcgcattctatttggctgccactttctttgttgaggatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTCGCTACAGGCTCAATTTTATC 116 487 899 Antisense
TCAATCTTCCGTAATCATGCCACCG 662 633 946 Antisense
CATGCCACCGAAAAAGCCGACGTCT 366 209 961 Antisense
CCGACGTCTATATTTGTGCTCTATC 705 263 977 Antisense
TCCTCTTCTTTGCCATATTCATTGC 171 593 1022 Antisense
AATGGCTGTCTAATTCTCATCTATT 186 163 1060 Antisense
GTCAATGTGCCTGAACTGGTCTGTA 694 463 1095 Antisense
CTCGCCGTTCAGACAATGGTTGCAC 243 233 1171 Antisense
GGAGACGCAGCGAGTCCGTATATCA 442 517 1204 Antisense
TTGCTGGCGCATTCTATTTGGCTGC 455 701 1331 Antisense
GCTGCCACTTTCTTTGTTGAGGATG 677 297 1351 Antisense
Sequence Source Affymetrix Proprietary Database