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[186783_at]

Description F58A4.1 /REP_DB=WormBase Gene ID /WP=CE20889 /TR=SW:P34468 /GB=CAA80169.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 33      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 12
(-3)
A 		102.4
(3)
P 		77.4
(1.3)
A 		80.4
(1.5)
A 		90
B 44.8
(0.2)
A 		40.9
(-0.7)
M 		56.6
(3)
A 		31.3
(-3)
P 		25
C 19.9
(-3)
A 		84.4
(2.6)
A 		46.6
(-0.7)
A 		88.5
(3)
P 		69
avr 25.6
(-3) 		75.9
(3) 		60.2
(1.1) 		66.7
(1.9) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 59.1
(-0)
A 		48
(-1.3)
A 		35.9
(-2.7)
A 		85
(3)
A 		33.6
(-3)
A 		47.7
(-1.4)
A 		51
B 43.3
(1.7)
A 		39.7
(1)
A 		49.4
(2.9)
M 		49.8
(3)
A 		20.1
(-3)
A 		35
(0)
A 		30
C 27.5
(-0.6)
A 		62.4
(3)
A 		56.4
(2.4)
A 		6.9
(-2.8)
A 		4.5
(-3)
A 		22.9
(-1.1)
A 		58
avr 43.3
(1.7) 		50
(3) 		47.2
(2.5) 		47.2
(2.5) 		19.4
(-3) 		35.2
(0.1) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 4.4
(-3)
A 		22.2
(3)
P 		20.2
(2.3)
A 		11.8
(-0.5)
A 		18
B 14.3
(3)
A 		10.1
(-0.3)
M 		13.1
(2.1)
A 		6.7
(-3)
P 		8
C 6.6
(-3)
A 		24.3
(3)
A 		16.2
(0.3)
A 		14.9
(-0.2)
P 		18
avr 8.4
(-3) 		18.9
(3) 		16.5
(1.6) 		11.1
(-1.5) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 10.9
(-1.6)
A 		17.1
(1.1)
A 		7.8
(-3)
A 		21.5
(3)
A 		10.2
(-1.9)
A 		11.6
(-1.3)
A 		14
B 15
(3)
A 		13.2
(1.4)
A 		12
(0.4)
M 		13.2
(1.4)
A 		8.2
(-3)
A 		13
(1.2)
A 		7
C 10.2
(-0)
A 		19
(3)
A 		14.4
(1.4)
A 		1.4
(-3)
A 		1.4
(-3)
A 		7.7
(-0.9)
A 		18
avr 12
(0.3) 		16.4
(3) 		11.4
(-0.1) 		12
(0.3) 		6.6
(-3) 		10.8
(-0.4) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186783_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6531
Sequence Type Exemplar sequence
Representative Public ID F58A4.1 NCBI
Target Description F58A4.1 /REP_DB=WormBase Gene ID /WP=CE20889 /TR=SW:P34468 /GB=CAA80169.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066722(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066722 NCBI Caenorhabditis elegans F58A4.1 (F58A4.1) mRNA, complete cds. 11/11 None
SNAP00000012186 ENSEMBL cdna:SNAP chromosome:CEL140:III:9598371:9599905:1 11/11 None
GENEFINDER00000012204 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9598371:9599905:1 11/11 None
F58A4.1 ENSEMBL cdna:known chromosome:CEL140:III:9598371:9599945:1 gene:F58A4.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9598366-9599901(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58A4.1
Entrez Gene 176355 Entrez gene
SwissProt P34468 EMBL-EBI
WormBase CE20889 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA80169 Hypothetical protein F58A4.1 [Caenorhabditis elegans] ref|NP_499123.1| F58A4.1 [Caenorhabditis elegans] sp|P34468|YMH1_CAEEL Hypothetical protein F58A4.1 in chromosome III 3.0E-80
blast S40973 hypothetical protein F58A4.1 - Caenorhabditis elegans (fragment) 5.0E-67
blast CAA82385 Hypothetical protein C48B4.12b [Caenorhabditis elegans] emb|CAA80172.1| Hypothetical protein C48B4.12b [Caenorhabditis elegans] ref|NP_499121.1| C48B4.12b [Caenorhabditis elegans] 5.0E-17
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499123.1 1 7-29
F58A4.1 1 7-29
SNAP00000012186 1 7-29
GENEFINDER00000012204 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:186783_AT
cgccaaaatctccaacgactacttcgatttcgacatcaactgtttcgacaactccagaaa
gactaactaaaccttatgaggagacagatacaccaatcccaactcattcttctccaagta
catcaacatctacgtcaacatcaacttcaacttcaacctcgacatcgagatcaacttcca
ctgttactcccaccaccagatcatcgacgacgacaacagccacctccacacctacatctt
catcgaaggctaccaccacctcagctcagattacacagcctgaaatcccacaagctgccc
caggaacagttcttaaaggcgaagagttcccagttaaacaagacgggttaggtgatggtg
gcgttgtccatggacctggaacgacattttggatcagaagccccaccccgccaaatattc
cacttcttgtcggagggcaatcccgattggccacagttcgtccagattccccatatgctt
cagatgctgctctcaatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCCAAAATCTCCAACGACTACTTC 81 259 188 Antisense
GACATCAACTGTTTCGACAACTCCA 672 367 219 Antisense
GAGACAGATACACCAATCCCAACTC 220 393 268 Antisense
CGAGATCAACTTCCACTGTTACTCC 103 251 353 Antisense
TCCACACCTACATCTTCATCGAAGG 94 589 412 Antisense
CCACCTCAGCTCAGATTACACAGCC 683 273 443 Antisense
TTACACAGCCTGAAATCCCACAAGC 412 683 458 Antisense
ACAAGCTGCCCCAGGAACAGTTCTT 15 113 477 Antisense
GTGGCGTTGTCCATGGACCTGGAAC 242 491 545 Antisense
ATATTCCACTTCTTGTCGGAGGGCA 208 19 602 Antisense
ATGCTTCAGATGCTGCTCTCAATCC 347 43 662 Antisense
Sequence Source Affymetrix Proprietary Database