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[186782_at]

Description C09G5.8 /REP_DB=WormBase Gene ID /WP=CE25774 /TR=SW:Q09459 /GB=CAA86767.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 25      6grp_total > 15      4grp_total > 29      6grp_high1_sub > 01_02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 86.7
(-0.6)
P 		93.4
(-0.1)
P 		49.5
(-3)
A 		141.4
(3)
P 		92
B 143.9
(3)
P 		64.1
(-1.3)
A 		32.3
(-3)
A 		102.3
(0.8)
P 		112
C 139.4
(3)
P 		55.4
(-1.3)
A 		22.3
(-3)
A 		109.6
(1.5)
P 		117
avr 123.3
(3) 		71
(-0.5) 		34.7
(-3) 		117.8
(2.6) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 117
(1.5)
P 		139
(3)
P 		84.1
(-0.7)
P 		60.7
(-2.2)
A 		112.4
(1.2)
P 		49.5
(-3)
A 		90
B 119.4
(3)
P 		92.7
(0.9)
P 		83.7
(0.2)
M 		43.7
(-3)
A 		43.5
(-3)
P 		67.3
(-1.1)
P 		76
C 87.6
(0.6)
P 		103.9
(3)
P 		65.5
(-2.7)
A 		76.4
(-1.1)
P 		63.2
(-3)
P 		80.4
(-0.5)
P 		41
avr 108
(2.5) 		111.9
(3) 		77.8
(-1) 		60.3
(-3) 		73
(-1.5) 		65.7
(-2.4) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 31.6
(3)
P 		20.3
(-0.6)
P 		13
(-3)
A 		20.7
(-0.5)
P 		19
B 45.9
(3)
P 		15.8
(-1.7)
A 		7.5
(-3)
A 		21.8
(-0.8)
P 		38
C 46.1
(3)
P 		15.9
(-1.7)
A 		7.8
(-3)
A 		18.5
(-1.3)
P 		38
avr 41.2
(3) 		17.3
(-1.5) 		9.4
(-3) 		20.3
(-0.9) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 21.6
(-1.5)
P 		49.4
(3)
P 		18.3
(-2)
P 		15.4
(-2.5)
A 		33.9
(0.5)
P 		12.1
(-3)
A 		37
B 41.6
(3)
P 		30.9
(0.9)
P 		20.3
(-1.3)
M 		11.6
(-3)
A 		17.7
(-1.8)
P 		25.1
(-0.3)
P 		30
C 32.5
(3)
P 		31.7
(2.7)
P 		16.7
(-2.5)
A 		15.4
(-3)
P 		20.4
(-1.2)
P 		26.9
(1)
P 		17
avr 31.9
(1.6) 		37.3
(3) 		18.4
(-1.9) 		14.1
(-3) 		24
(-0.4) 		21.4
(-1.1) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186782_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3550
Sequence Type Exemplar sequence
Representative Public ID C09G5.8 NCBI
Target Description C09G5.8 /REP_DB=WormBase Gene ID /WP=CE25774 /TR=SW:Q09459 /GB=CAA86767.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063912(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063912 NCBI Caenorhabditis elegans C09G5.8 (C09G5.8) mRNA, complete cds. 11/11 None
SNAP00000035263 ENSEMBL cdna:SNAP chromosome:CEL140:II:10726413:10729161:1 10/11 None
GENEFINDER00000035272 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10726413:10729161:1 10/11 None
C09G5.8 ENSEMBL cdna:known chromosome:CEL140:II:10718303:10729163:1 gene:C09G5.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10718299-10729158(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C09G5.8
Entrez Gene 174654 Entrez gene
SwissProt Q09459 EMBL-EBI
WormBase CE25774 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.14928.1.S1_S_AT similar to retinitis pigmentosa GTPase regulator interacting protein 1 cfa
CHICKEN:GGA.11750.1.S1_S_AT similar to Fantom protein gga
CHICKEN:GGA.15173.1.S1_S_AT similar to Fantom protein gga
CHICKEN:GGAAFFX.25904.1.S1_S_AT similar to Fantom protein gga
HG-U133_PLUS_2:213959_S_AT KIAA1005 protein hs
HG-U133A_2:213959_S_AT KIAA1005 protein hs
HG-U133A:213959_S_AT KIAA1005 protein hs
HU35KSUBB:RC_R38635_AT KIAA1005 protein hs
U133_X3P:HS.12328.0.S1_3P_A_AT KIAA1005 protein hs
HG-U95AV2:37773_AT KIAA1005 protein hs
HG-U95D:84315_AT KIAA1005 protein hs
HU35KSUBC:RC_N67158_AT KIAA1005 protein hs
MG-U74CV2:133928_AT RIKEN cDNA 1700047E16 gene mm
MG-U74CV2:136226_AT RIKEN cDNA 1700047E16 gene mm
MOE430B:1443345_AT RIKEN cDNA 1700047E16 gene (1700047E16Rik), mRNA mm
MOUSE430_2:1443345_AT RIKEN cDNA 1700047E16 gene (1700047E16Rik), mRNA mm
MG-U74CV2:169588_R_AT RIKEN cDNA 1700047E16 gene (1700047E16Rik), mRNA mm
Protein Similarities
Method ID Description E-Value
blast CAA86767 Hypothetical protein C09G5.8 [Caenorhabditis elegans] emb|CAA86762.2| Hypothetical protein C09G5.8 [Caenorhabditis elegans] ref|NP_496313.1| C09G5.8 [Caenorhabditis elegans] sp|Q09459|YQ38_CAEEL Hypothetical protein C09G5.8 in chromosome II 0.0
blast CAE59615 Hypothetical protein CBG03024 [Caenorhabditis briggsae] 0.0
blast T19148 hypothetical protein C09G5.8 - Caenorhabditis elegans 0.0
blast T20144 hypothetical protein C52A11.1 - Caenorhabditis elegans 0.0
Sequence
Target Sequence 
>C. ELEGANS:186782_AT
ctacatctgaatcctcgtcaacttcatcaccacgtcgcgccgaaaaagcacctgttccac
tgccggattatgaagggcatagtttgatcaaagtgcgaaaaccgttgtcaccaaccgaca
aagatgtactggaaccgaatatgaaagtttcaatacaattggaaacatttgaacttgttc
ccggatcaagtctgactccattgacaagagaagagacgacgtttttcgttgattgggtat
ttttggattttacgaatgagcagtcgaagagtacgatatttgattttccgagaagaccac
aagaaatggtggatattcgatatacaaaagaatacaccctgacgcgtggtcaactttctc
ttctcgatcaatggatccgtgctagcatcaaatttgagttaaccatcatcaagatcagtc
caggcgacgaagaggagctcggcttcggaagtttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTACATCTGAATCCTCGTCAACTTC 256 227 4025 Antisense
GCCGAAAAAGCACCTGTTCCACTGC 323 285 4063 Antisense
CCTGTTCCACTGCCGGATTATGAAG 272 267 4075 Antisense
GTGCGAAAACCGTTGTCACCAACCG 125 475 4117 Antisense
GAAACATTTGAACTTGTTCCCGGAT 269 355 4186 Antisense
TTCCCGGATCAAGTCTGACTCCATT 11 697 4202 Antisense
GAGACGACGTTTTTCGTTGATTGGG 225 393 4237 Antisense
AAAGAATACACCCTGACGCGTGGTC 409 123 4351 Antisense
GATCAATGGATCCGTGCTAGCATCA 390 421 4390 Antisense
ATCATCAAGATCAGTCCAGGCGACG 252 29 4429 Antisense
AGAGGAGCTCGGCTTCGGAAGTTTG 429 65 4455 Antisense
Sequence Source Affymetrix Proprietary Database