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[186781_at]

Description F35F10.13 /REP_DB=WormBase Gene ID /WP=CE09938 /TR=Q9GYT2 /GB=AAF99928.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1190
1 2 3 4 range
A 46.2
(-3)
A 		73.1
(-2.8)
A 		54.5
(-2.9)
A 		837.7
(3)
P 		792
B 51.3
(-2.9)
P 		76.3
(-2.8)
P 		36.5
(-3)
A 		1226.9
(3)
P 		1190
C 57.1
(-2.9)
A 		88.6
(-2.7)
A 		37.7
(-3)
A 		986.5
(3)
P 		949
avr 51.5
(-2.9) 		79.3
(-2.8) 		42.9
(-3) 		1017
(3) 		974

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 560
1 2 3 4 5 6 range
A 24
(-3)
A 		44.9
(-2.7)
A 		66.6
(-2.4)
A 		92.9
(-2)
M 		239.5
(0)
P 		448.4
(3)
P 		424
B 54.9
(-2.6)
A 		23.7
(-3)
A 		49.6
(-2.7)
A 		116.9
(-1.9)
P 		299
(0.2)
P 		532
(3)
P 		508
C 27.9
(-3)
A 		73.3
(-2.5)
A 		51.3
(-2.7)
A 		86.9
(-2.4)
A 		283.9
(-0.2)
P 		583.2
(3)
P 		555
avr 35.6
(-3) 		47.3
(-2.9) 		55.8
(-2.8) 		98.9
(-2.2) 		274.1
(-0.1) 		521.2
(3) 		486
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 253
1 2 3 4 range
A 16.8
(-2.9)
A 		15.9
(-2.9)
A 		14.3
(-3)
A 		122.6
(3)
P 		108
B 16.4
(-2.8)
P 		18.9
(-2.8)
P 		8.5
(-3)
A 		261.5
(3)
P 		253
C 18.9
(-2.8)
A 		25.5
(-2.5)
A 		13.1
(-3)
A 		166.3
(3)
P 		153
avr 17.4
(-2.8) 		20.1
(-2.7) 		12
(-3) 		183.5
(3) 		172

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 4.4
(-3)
A 		16
(-2.3)
A 		14.5
(-2.4)
A 		23.6
(-1.9)
M 		72.3
(0.9)
P 		109.2
(3)
P 		105
B 19.1
(-2.6)
A 		7.9
(-3)
A 		12
(-2.9)
A 		31
(-2.3)
P 		121.5
(0.6)
P 		198.4
(3)
P 		191
C 10.3
(-3)
A 		22.4
(-2.6)
A 		13
(-2.9)
A 		17.5
(-2.8)
A 		91.9
(-0.4)
P 		195.2
(3)
P 		185
avr 11.3
(-3) 		15.4
(-2.8) 		13.2
(-2.9) 		24
(-2.5) 		95.2
(0.2) 		167.6
(3) 		156
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186781_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15316
Sequence Type Exemplar sequence
Representative Public ID F35F10.13 NCBI
Target Description F35F10.13 /REP_DB=WormBase Gene ID /WP=CE09938 /TR=Q9GYT2 /GB=AAF99928.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071518(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071518 NCBI Caenorhabditis elegans F35F10.13 (F35F10.13) mRNA, complete cds. 11/11 None
SNAP00000011250 ENSEMBL cdna:SNAP chromosome:CEL140:V:3318034:3318888:-1 11/11 None
F35F10.13 ENSEMBL cdna:known chromosome:CEL140:V:3318034:3318888:-1 gene:F35F10.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3318033-3318888(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35F10.13
Entrez Gene 185316 Entrez gene
SwissProt Q9GYT2 EMBL-EBI
WormBase CE09938 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99928 Hypothetical protein F35F10.13 [Caenorhabditis elegans] ref|NP_503919.1| F35F10.13 [Caenorhabditis elegans] 1.0E-112
blast AAB37582 Hypothetical protein T20D4.15 [Caenorhabditis elegans] ref|NP_503946.1| T20D4.15 [Caenorhabditis elegans] 8.0E-65
blast NP_503904 T28A11.3 [Caenorhabditis elegans] gb|AAC48115.1| Hypothetical protein T28A11.3 [Caenorhabditis elegans] 2.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 1.5E-36
Sequence
Target Sequence 
>C. ELEGANS:186781_AT
atcttctgatgctggaaacgacaccaaatgtagtgatggagtagttgggattatatgcag
acagactgtgcacgatttacctcgaaaaatgagcgaactcaacatgaatgacataaatga
gatgagggaattcaagaagtatgtcgacaatgcgatcaactgttttactgctctcacatg
cccgccaaacaccaaggaaactagaaagcagagaattgaacaaactgaaaagtatcgcca
agctcttgtctattttgtcgataaattcccacaatgtagtgccaagttgaatgccagaaa
aacaaagtgttttgaccactgggacctgaataaaatccgtgcgacagacgaggaaaagaa
caatcagcaaaaaagaagtgagacttgtgagaaatatttcggaaaaggtgactgcttgaa
gaaggaaatcacagaagtttgtggcaagaaagaatggaataagttccgcgagcaaatcac
caatctttctctcggttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTTCTGATGCTGGAAACGACACC 240 31 69 Antisense
GACAGACTGTGCACGATTTACCTCG 424 369 128 Antisense
CGATCAACTGTTTTACTGCTCTCAC 417 249 221 Antisense
TGCCCGCCAAACACCAAGGAAACTA 591 285 247 Antisense
GAAAAGTATCGCCAAGCTCTTGTCT 192 355 295 Antisense
GCCAAGCTCTTGTCTATTTTGTCGA 114 279 305 Antisense
GATAAATTCCCACAATGTAGTGCCA 607 421 328 Antisense
TGTAGTGCCAAGTTGAATGCCAGAA 700 559 343 Antisense
GTGTTTTGACCACTGGGACCTGAAT 609 485 375 Antisense
GGGACCTGAATAAAATCCGTGCGAC 649 493 389 Antisense
AAATCACCAATCTTTCTCTCGGTTT 391 117 542 Antisense
Sequence Source Affymetrix Proprietary Database