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[186779_at]

Description K11H3.4 /REP_DB=WormBase Gene ID /WP=CE00264 /TR=SW:P34520 /GB=CAA80174.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 03      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 2
(-3)
A 		6.4
(-2.7)
A 		3
(-2.9)
A 		83.3
(3)
A 		81
B 18.8
(2.2)
A 		7.7
(-3)
A 		12.4
(-0.8)
A 		20.4
(3)
A 		13
C 24.2
(-1.7)
A 		14.7
(-2.4)
A 		5.7
(-3)
A 		92
(3)
A 		86
avr 15
(-2.2) 		9.6
(-2.7) 		7
(-3) 		65.2
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 4.1
(-3)
A 		7.3
(-2.7)
A 		12.9
(-2.1)
A 		5.9
(-2.8)
A 		47.8
(1.6)
A 		61
(3)
A 		57
B 21.2
(-1.7)
A 		7
(-3)
A 		23.3
(-1.5)
A 		18.3
(-1.9)
A 		71.2
(3)
A 		66.3
(2.5)
M 		64
C 7.6
(-2.6)
A 		79.5
(3)
A 		2.4
(-3)
A 		61.2
(1.6)
A 		53.6
(1)
A 		55.9
(1.2)
A 		77
avr 11
(-3) 		31.3
(-0.6) 		12.9
(-2.8) 		28.5
(-0.9) 		57.5
(2.6) 		61.1
(3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 0.7
(-3)
A 		1.4
(-2.6)
A 		0.8
(-2.9)
A 		12.2
(3)
A 		12
B 6
(3)
A 		1.9
(-3)
A 		2.9
(-1.5)
A 		4.3
(0.5)
A 		4
C 8
(-0.3)
A 		4.2
(-2)
A 		2
(-3)
A 		15.5
(3)
A 		14
avr 4.9
(-1) 		2.5
(-2.6) 		1.9
(-3) 		10.7
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 0.8
(-3)
A 		2.6
(-2.2)
A 		2.8
(-2.1)
A 		1.5
(-2.7)
A 		14.4
(2.8)
A 		14.9
(3)
A 		14
B 7.4
(-1.8)
A 		2.3
(-3)
A 		5.7
(-2.2)
A 		4.8
(-2.4)
A 		28.9
(3)
A 		24.7
(2.1)
M 		27
C 2.8
(-2.4)
A 		24.2
(3)
A 		0.6
(-3)
A 		12.3
(-0)
A 		17.3
(1.2)
A 		18.7
(1.6)
A 		24
avr 3.7
(-2.8) 		9.7
(-0.7) 		3
(-3) 		6.2
(-1.9) 		20.2
(3) 		19.4
(2.7) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186779_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6924
Sequence Type Exemplar sequence
Representative Public ID K11H3.4 NCBI
Target Description K11H3.4 /REP_DB=WormBase Gene ID /WP=CE00264 /TR=SW:P34520 /GB=CAA80174.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066783(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066783 NCBI Caenorhabditis elegans K11H3.4 (K11H3.4) mRNA, complete cds. 9/11 None
K11H3.4 ENSEMBL cdna:known chromosome:CEL140:III:9832829:9838205:1 gene:K11H3.4 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008456 8/11 Cross Hyb Matching Probes None
GENEFINDER00000008472 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9832824-9835791(+) 94.8 100.0
Public Domain and Genome References
Gene Title
Ensembl K11H3.4
Entrez Gene 187307 Entrez gene
SwissProt P34520 EMBL-EBI
WormBase CE28606 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA80174 Hypothetical protein K11H3.4 [Caenorhabditis elegans] ref|NP_499184.1| K11H3.4 [Caenorhabditis elegans] sp|P34520|YM44_CAEEL Hypothetical protein K11H3.4 in chromosome III 0.0
blast AAK84570 Hypothetical protein T13G4.1 [Caenorhabditis elegans] ref|NP_508224.1| T13G4.1 [Caenorhabditis elegans] 2.0E-27
blast CAE65105 Hypothetical protein CBG09968 [Caenorhabditis briggsae] 6.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR003169 EMBL-EBI GYF 4.2E-25
Sequence
Target Sequence 
>C. ELEGANS:186779_AT
atctgactattcgtttcttctttgaaaattttttgatttatccaatggagatggaagaca
tagacgacgatataactgtgttctacactgacgatcgtggtacagtacaaggaccatacg
gagcctcaactgtgcttgattggtaccagaaaggatatttctcggacaatcatcaaatga
gattcactgacaatggacaacgaattgggaatttattcacatatgaaactacattgggtg
agatgaaagcgagatatggagaagaagcaccgattccgacgaaactcgaagattttaatt
ttcgtggattctcaattaaaccgaaatctaataaaagacaactcgatagagatccactta
aattaccaaggaaagtgaatccgagagatctggaaccaaccgatgccagaaacaggaatg
gaaattatgaaaatcgaaatgaatatggttataactgtgatagacaaagtacaagcgcag
tggattctaggaaccaatctgtaccgcccgcctctattagtattgcatgcaagactaata
gaggaaatacggtgatagtcttgcacccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTGACTATTCGTTTCTTCTTTGA 293 33 1127 Antisense
GTGTTCTACACTGACGATCGTGGTA 52 479 1204 Antisense
GTACAAGGACCATACGGAGCCTCAA 408 459 1231 Antisense
GGAGCCTCAACTGTGCTTGATTGGT 173 523 1246 Antisense
GGATATTTCTCGGACAATCATCAAA 55 511 1279 Antisense
AAGCACCGATTCCGACGAAACTCGA 312 109 1391 Antisense
GAGAGATCTGGAACCAACCGATGCC 529 395 1509 Antisense
GTACAAGCGCAGTGGATTCTAGGAA 355 461 1595 Antisense
ATTCTAGGAACCAATCTGTACCGCC 284 11 1610 Antisense
GCCCGCCTCTATTAGTATTGCATGC 171 287 1632 Antisense
AAATACGGTGATAGTCTTGCACCCC 460 115 1671 Antisense
Sequence Source Affymetrix Proprietary Database