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[186778_at]

Description T10B9.9 /REP_DB=WormBase Gene ID /WP=CE01661 /TR=SW:Q09352 /GB=CAA88608.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 45      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 90      6grp_total > 46      4grp_total > 39      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 237
1 2 3 4 range
A 301
(3)
P 		115.1
(-2.8)
P 		107.5
(-3)
P 		173.7
(-0.9)
P 		194
B 344.3
(3)
P 		192.7
(-1.4)
P 		135.6
(-3)
P 		161.7
(-2.2)
P 		209
C 299.3
(3)
P 		142.8
(-2.1)
P 		116.1
(-3)
P 		189.5
(-0.6)
P 		183
avr 314.9
(3) 		150.2
(-2.1) 		119.7
(-3) 		175
(-1.3) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 176.7
(0.6)
P 		232.3
(3)
P 		166.1
(0.1)
P 		201.8
(1.7)
P 		95.4
(-3)
P 		118.8
(-2)
P 		137
B 151.8
(-2.9)
P 		217.2
(3)
P 		161.3
(-2)
P 		181
(-0.3)
P 		154.3
(-2.7)
P 		150.6
(-3)
P 		67
C 183.4
(0.5)
P 		189.5
(0.8)
P 		131
(-1.6)
P 		171.3
(0)
P 		97.5
(-3)
P 		243.6
(3)
P 		146
avr 170.6
(0.4) 		213
(3) 		152.8
(-0.7) 		184.7
(1.3) 		115.7
(-3) 		171
(0.4) 		97
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 109.6
(3)
P 		25
(-3)
P 		28.1
(-2.8)
P 		25.4
(-3)
P 		85
B 109.8
(3)
P 		47.6
(-1.8)
P 		31.4
(-3)
P 		34.5
(-2.8)
P 		78
C 99.1
(3)
P 		41
(-2.2)
P 		40.5
(-2.2)
P 		31.9
(-3)
P 		67
avr 106.2
(3) 		37.9
(-2.4) 		33.3
(-2.8) 		30.6
(-3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 32.6
(-2.6)
P 		82.6
(3)
P 		36.2
(-2.2)
P 		51.2
(-0.5)
P 		28.8
(-3)
P 		28.9
(-3)
P 		54
B 52.8
(-0.5)
P 		72.3
(3)
P 		39.2
(-3)
P 		47.9
(-1.4)
P 		62.7
(1.3)
P 		56.2
(0.1)
P 		33
C 68
(1.4)
P 		57.8
(0.1)
P 		33.3
(-2.8)
P 		34.4
(-2.7)
P 		31.6
(-3)
P 		81.6
(3)
P 		50
avr 51.1
(-0.4) 		70.9
(3) 		36.2
(-3) 		44.5
(-1.6) 		41
(-2.2) 		55.6
(0.4) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186778_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3150
Sequence Type Exemplar sequence
Representative Public ID T10B9.9 NCBI
Target Description T10B9.9 /REP_DB=WormBase Gene ID /WP=CE01661 /TR=SW:Q09352 /GB=CAA88608.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063706
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000024361 ENSEMBL cdna:SNAP chromosome:CEL140:II:9775149:9775787:-1 None
NM_063706 NCBI Caenorhabditis elegans T10B9.9 (T10B9.9) mRNA, complete cds. None
T10B9.9 ENSEMBL cdna:known chromosome:CEL140:II:9774901:9775794:-1 gene:T10B9.9 None
GENEFINDER00000024380 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9775070:9775787:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9775066-9777130(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10B9.9
Entrez Gene 174539 Entrez gene
SwissProt Q09352 EMBL-EBI
WormBase CE31992 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88608 Hypothetical protein T10B9.9 [Caenorhabditis elegans] ref|NP_496107.2| T10B9.9 [Caenorhabditis elegans] sp|Q09352|YRV9_CAEEL Hypothetical protein T10B9.29 in chromosome II precursor 2.0E-63
blast CAE57971 Hypothetical protein CBG01032 [Caenorhabditis briggsae] 6.0E-42
blast CAA88608 Hypothetical protein T10B9.9 [Caenorhabditis elegans] ref|NP_496107.2| T10B9.9 [Caenorhabditis elegans] sp|Q09352|YRV9_CAEEL Hypothetical protein T10B9.29 in chromosome II precursor 3.0E-11
Sequence
Target Sequence 
>C. ELEGANS:186778_AT
attttcccattcatttttgcacgtttaattgggcacttttgtgcaagtacacttataaaa
tccactctattttgtcctaaagtaaaacatgggcacatcatctgtacttctgatgatcgc
ctcgtcattgattcttctggaagttgtgatgacgtcatcaacagaagtttcaaagtcaaa
agagttggagaatttggtggaggtgttgaggtgtttcaaagatttgaaagagaggtaaga
tttcagaaatttcaaaaccgtattcatttaaaggaccatcgaacttttaaaatcccatcg
ttgtttttgtcacgagtggtcaacggacatacgtcacttatatcggaagccaaatgcgtc
tttttgatgatcgaggtcgcgaagtatcgtgtgacgcagaaaagcaacaggaaatccgcc
aacgatccgatcgtcgatgcatcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTTCCCATTCATTTTTGCACGTT 613 13 115 Antisense
AAATCCACTCTATTTTGTCCTAAAG 427 119 172 Antisense
CATGGGCACATCATCTGTACTTCTG 462 209 202 Antisense
GCCTCGTCATTGATTCTTCTGGAAG 265 283 233 Antisense
GACCATCGAACTTTTAAAATCCCAT 151 383 388 Antisense
AAATCCCATCGTTGTTTTTGTCACG 143 117 404 Antisense
ACGGACATACGTCACTTATATCGGA 32 97 437 Antisense
AATGCGTCTTTTTGATGATCGAGGT 75 167 467 Antisense
GAGGTCGCGAAGTATCGTGTGACGC 220 403 487 Antisense
ACAGGAAATCCGCCAACGATCCGAT 485 107 521 Antisense
ACGATCCGATCGTCGATGCATCTTC 85 95 536 Antisense
Sequence Source Affymetrix Proprietary Database