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[186776_at]

Description ZK673.3 /REP_DB=WormBase Gene ID /WP=CE16743 /TR=SW:Q09377 /GB=CAA88485.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 65      6grp_total > 66      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 144.9
(2)
P 		86.3
(-1)
A 		46.4
(-3)
A 		163.6
(3)
P 		117
B 104.9
(-0.8)
P 		63.7
(-3)
A 		84.2
(-1.9)
A 		178.5
(3)
P 		115
C 135.1
(1.9)
P 		135.2
(1.9)
A 		138.5
(3)
P 		119.7
(-3)
P 		19
avr 128.3
(0.6) 		95.1
(-2.5) 		89.7
(-3) 		153.9
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 205
1 2 3 4 5 6 range
A 104.3
(-3)
A 		141.5
(-0.7)
P 		184.4
(1.9)
P 		133.6
(-1.2)
P 		151.8
(-0.1)
P 		201.7
(3)
P 		97
B 130.1
(-3)
P 		165.5
(-1.4)
P 		237
(1.7)
P 		171.1
(-1.2)
P 		146.6
(-2.3)
P 		266.4
(3)
P 		136
C 173.7
(-1.4)
P 		172.3
(-1.5)
P 		168.3
(-1.6)
P 		177.1
(-1.3)
P 		125.2
(-3)
P 		308.8
(3)
P 		184
avr 136
(-3) 		159.8
(-1.8) 		196.6
(-0) 		160.6
(-1.8) 		141.2
(-2.7) 		259
(3) 		123
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 52.8
(3)
P 		18.7
(-2)
A 		12.1
(-3)
A 		23.9
(-1.3)
P 		41
B 33.5
(1.8)
P 		15.7
(-3)
A 		19.5
(-2)
A 		38
(3)
P 		22
C 44.7
(2.2)
P 		38.9
(1)
A 		48.3
(3)
P 		20.2
(-3)
P 		28
avr 43.7
(3) 		24.4
(-3) 		26.6
(-2.3) 		27.4
(-2.1) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 19.2
(-3)
A 		50.3
(3)
P 		40.2
(1.1)
P 		33.9
(-0.2)
P 		45.8
(2.1)
P 		49.1
(2.8)
P 		31
B 45.3
(-3)
P 		55.1
(-1.9)
P 		57.6
(-1.6)
P 		45.3
(-3)
P 		59.6
(-1.4)
P 		99.3
(3)
P 		54
C 64.4
(-0.5)
P 		52.6
(-1.5)
P 		42.8
(-2.4)
P 		35.6
(-3)
P 		40.5
(-2.6)
P 		103.4
(3)
P 		68
avr 43
(-2.4) 		52.7
(-1.1) 		46.9
(-1.9) 		38.3
(-3) 		48.6
(-1.6) 		83.9
(3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186776_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2870
Sequence Type Exemplar sequence
Representative Public ID ZK673.3 NCBI
Target Description ZK673.3 /REP_DB=WormBase Gene ID /WP=CE16743 /TR=SW:Q09377 /GB=CAA88485.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063845(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063845 NCBI Caenorhabditis elegans ZK673.3 (ZK673.3) mRNA, complete cds. 11/11 None
SNAP00000007625 ENSEMBL cdna:SNAP chromosome:CEL140:II:10450680:10451852:1 11/11 None
GENEFINDER00000007636 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10450680:10451852:1 11/11 None
ZK673.3 ENSEMBL cdna:known chromosome:CEL140:II:10450584:10451852:1 gene:ZK673.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10450676-10451849(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK673.3
Entrez Gene 174609 Entrez gene
SwissProt Q09377 EMBL-EBI
WormBase CE16743 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88485 Hypothetical protein ZK673.3 [Caenorhabditis elegans] ref|NP_496246.1| ZK673.3 [Caenorhabditis elegans] sp|Q09377|YS53_CAEEL Hypothetical protein ZK673.3 in chromosome II 1.0E-172
blast CAA88480 Hypothetical protein ZK673.4 [Caenorhabditis elegans] ref|NP_496247.1| ZK673.4 [Caenorhabditis elegans] sp|Q09663|YS54_CAEEL Hypothetical protein ZK673.4 in chromosome II 1.0E-9
Sequence
Target Sequence 
>C. ELEGANS:186776_AT
aaggagagtcttcgagcatgcacgaaacatttcaacagtattttccatgtcatcttcgaa
ggactgcaaatcgagaacacctactgtgctcatcatgcaaaatacagtcttgccaatcgt
tggtgcaaagtctacacgatgattcgatcttccctgggcgagcagttcacaaagttcgat
gtgcgcaattttaaatcaatattgcaatcatttttggatacttttggtgaaattgatgac
gacaaaaaggataaagaatcttctcattttgatgaatgttttgaagaaatggattcagaa
aacgtagaaattaaaatggagagcccacaagaagaagctgcagagaaatcgaagttttct
gaaaacctagtggaggtaaaactggaaccaattgaaactcatgaacttgacaaaactata
tccgacttttcttcaagtgatataattgattcgtcccaaaaactgcagcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGAGAGTCTTCGAGCATGCACGA 518 159 352 Antisense
AACAGTATTTTCCATGTCATCTTCG 388 137 385 Antisense
GTCATCTTCGAAGGACTGCAAATCG 535 467 400 Antisense
AGAACACCTACTGTGCTCATCATGC 204 73 425 Antisense
AAATACAGTCTTGCCAATCGTTGGT 380 115 451 Antisense
GCCAATCGTTGGTGCAAAGTCTACA 463 273 463 Antisense
CTACACGATGATTCGATCTTCCCTG 207 227 483 Antisense
TTCCCTGGGCGAGCAGTTCACAAAG 549 695 501 Antisense
ACAAAGTTCGATGTGCGCAATTTTA 547 109 520 Antisense
AAACTATATCCGACTTTTCTTCAAG 551 127 764 Antisense
GATTCGTCCCAAAAACTGCAGCAAA 251 433 799 Antisense
Sequence Source Affymetrix Proprietary Database