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[186775_at]

Description F45D11.13 /REP_DB=WormBase Gene ID /WP=CE23735 /TR=Q9N5T3 /GB=AAF39821.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 29.6
(-3)
A 		33
(-1.4)
A 		38.7
(1.4)
A 		42
(3)
P 		12
B 59.5
(3)
P 		34.2
(-3)
A 		34.4
(-3)
A 		51.6
(1.1)
A 		25
C 4
(-3)
A 		42.2
(1.1)
A 		25.2
(-0.7)
A 		60
(3)
A 		56
avr 31
(-3) 		36.5
(-1.4) 		32.8
(-2.5) 		51.2
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 41.8
(2.4)
A 		15.9
(-1.1)
A 		26.6
(0.3)
A 		2.4
(-3)
A 		24
(-0)
A 		45.9
(3)
P 		44
B 9.3
(-2.6)
A 		33.9
(2.6)
A 		21
(-0.1)
A 		7.6
(-3)
A 		23.9
(0.5)
A 		35.7
(3)
A 		28
C 8.7
(-3)
A 		53.1
(1.9)
M 		31.1
(-0.5)
A 		15.2
(-2.3)
A 		10.8
(-2.8)
A 		63.4
(3)
P 		55
avr 19.9
(-1.3) 		34.3
(0.9) 		26.2
(-0.3) 		8.4
(-3) 		19.6
(-1.3) 		48.3
(3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 10.8
(3)
A 		7.2
(-1.7)
A 		10.1
(2.1)
A 		6.2
(-3)
P 		5
B 19
(3)
P 		8.5
(-2.7)
A 		8
(-3)
A 		11
(-1.4)
A 		11
C 1.3
(-3)
A 		12.1
(3)
A 		8.8
(1.2)
A 		10.1
(1.9)
A 		11
avr 10.4
(3) 		9.3
(-1.7) 		9
(-3) 		9.1
(-2.6) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 7.7
(1)
A 		5.7
(-0.1)
A 		5.8
(-0.1)
A 		0.6
(-3)
A 		7.3
(0.8)
A 		11.2
(3)
P 		11
B 3.2
(-2.4)
A 		11.3
(1.9)
A 		5.1
(-1.4)
A 		2
(-3)
A 		9.7
(1.1)
A 		13.3
(3)
A 		11
C 3.2
(-3)
A 		16.2
(1.3)
M 		7.9
(-1.4)
A 		3.1
(-3)
A 		3.5
(-2.9)
A 		21.2
(3)
P 		18
avr 4.7
(-1.7) 		11.1
(1.2) 		6.3
(-1) 		1.9
(-3) 		6.8
(-0.8) 		15.2
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186775_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4986
Sequence Type Exemplar sequence
Representative Public ID F45D11.13 NCBI
Target Description F45D11.13 /REP_DB=WormBase Gene ID /WP=CE23735 /TR=Q9N5T3 /GB=AAF39821.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061480(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061480 NCBI Caenorhabditis elegans F45D11.13 (F45D11.13) mRNA, complete cds. 11/11 None
SNAP00000019554 ENSEMBL cdna:SNAP chromosome:CEL140:II:1000480:1001450:-1 11/11 None
F45D11.13 ENSEMBL cdna:known chromosome:CEL140:II:1000480:1001450:-1 gene:F45D11.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1000478-1001449(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F45D11.13
Entrez Gene 185787 Entrez gene
SwissProt Q9N5T3 EMBL-EBI
WormBase CE35933 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39821 Hypothetical protein F45D11.13 [Caenorhabditis elegans] ref|NP_493881.2| F45D11.13 [Caenorhabditis elegans] 1.0E-173
blast AAB37917 Hypothetical protein ZC204.8 [Caenorhabditis elegans] ref|NP_494023.1| ZC204.8 [Caenorhabditis elegans] 4.0E-43
blast AAC71169 Hypothetical protein W08F4.2 [Caenorhabditis elegans] ref|NP_493764.1| W08F4.2 [Caenorhabditis elegans] 6.0E-41
Sequence
Target Sequence 
>C. ELEGANS:186775_AT
gtgtactgggagttaccgcaaaacaatggattgagcttattgctcaagtttttatccaag
ataaaggtgttttgctgaaattgcaaaattcgaataaattcaacatcaaagaaattcagt
attatacacgagaactgaatattgtaagactgaaaattgaatcttcagaacttcaagaca
ctcaactttccaaaatgttccctaaagttgaagagttgacagttaccagggacaaaattc
ccagctccattttgagtcggaacttcaaaaagttgcgatttgacgatatcaaagtttcac
tcgacaatattttaatatccaactgctccagtttcctaattttcctgcaaactctccccg
acaaagacttaaaccgcttcatgaagctctggatcaaagagtcgaatcctaacctcaaaa
cattcgaagtctgtttcccggactatgaacaaactgggctcgatggaaccatccttttca
agggtatcaggtgtattgattctattaagcatggagaagtgacccggaagaagttcaaga
ggcatgatgggacgacggcgctggtttcggtatttgcaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTACTGGGAGTTACCGCAAAACA 13 485 308 Antisense
CTTCAAGACACTCAACTTTCCAAAA 637 221 478 Antisense
AATTCCCAGCTCCATTTTGAGTCGG 403 177 543 Antisense
TGCTCCAGTTTCCTAATTTTCCTGC 290 581 631 Antisense
GACAAAGACTTAAACCGCTTCATGA 594 365 667 Antisense
AGTCGAATCCTAACCTCAAAACATT 458 59 707 Antisense
ATTCGAAGTCTGTTTCCCGGACTAT 293 3 729 Antisense
CAAACTGGGCTCGATGGAACCATCC 615 191 757 Antisense
GGAACCATCCTTTTCAAGGGTATCA 625 529 772 Antisense
AGAGGCATGATGGGACGACGGCGCT 583 65 845 Antisense
GGCGCTGGTTTCGGTATTTGCAAGC 270 543 864 Antisense
Sequence Source Affymetrix Proprietary Database