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[186774_at]

Description Y39A3CR.8 /REP_DB=WormBase Gene ID /WP=CE25262 /TR=Q9N404 /GB=AAF60530.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 1.7
(-3)
A 		5.4
(-2.6)
A 		19.5
(-1.1)
A 		58
(3)
A 		56
B 39.7
(3)
A 		5.9
(-3)
A 		6.4
(-2.9)
A 		37.9
(2.7)
A 		34
C 18.4
(-1.1)
A 		38.5
(2.2)
A 		6.9
(-3)
A 		43.6
(3)
A 		37
avr 19.9
(-1.5) 		16.6
(-2) 		10.9
(-3) 		46.5
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 13.4
(-1)
A 		31.7
(3)
A 		14.4
(-0.7)
A 		13.4
(-1)
A 		4
(-3)
A 		4.9
(-2.8)
A 		28
B 2.8
(-2.6)
A 		22.5
(3)
A 		9.5
(-0.7)
A 		2.7
(-2.6)
A 		1.3
(-3)
A 		11.3
(-0.2)
A 		21
C 1.7
(-2.9)
A 		23.6
(2.4)
A 		1.2
(-3)
A 		20.4
(1.6)
A 		8.9
(-1.1)
A 		26
(3)
A 		25
avr 6
(-2.6) 		25.9
(3) 		8.4
(-2) 		12.2
(-0.9) 		4.7
(-3) 		14.1
(-0.3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 0.6
(-3)
A 		1.2
(-2.5)
A 		5.1
(0.4)
A 		8.5
(3)
A 		8
B 12.7
(3)
A 		1.5
(-3)
A 		1.5
(-3)
A 		8.1
(0.5)
A 		11
C 6.1
(-0.4)
A 		11.1
(3)
A 		2.4
(-3)
A 		7.4
(0.4)
A 		9
avr 6.5
(1.2) 		4.6
(-1.1) 		3
(-3) 		8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 2.5
(-2.2)
A 		11.3
(3)
A 		3.1
(-1.9)
A 		3.4
(-1.7)
A 		1.2
(-3)
A 		1.2
(-3)
A 		10
B 1
(-2.6)
A 		7.5
(3)
A 		2.3
(-1.5)
A 		0.7
(-2.8)
A 		0.5
(-3)
A 		4.2
(0.2)
A 		7
C 0.6
(-2.8)
A 		7.2
(1.9)
A 		0.3
(-3)
A 		4.1
(-0.3)
A 		2.9
(-1.1)
A 		8.7
(3)
A 		8
avr 1.4
(-3) 		8.7
(3) 		1.9
(-2.6) 		2.7
(-1.9) 		1.5
(-2.9) 		4.7
(-0.3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186774_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8204
Sequence Type Exemplar sequence
Representative Public ID Y39A3CR.8 NCBI
Target Description Y39A3CR.8 /REP_DB=WormBase Gene ID /WP=CE25262 /TR=Q9N404 /GB=AAF60530.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065069(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065069 NCBI Caenorhabditis elegans Y39A3CR.8 (Y39A3CR.8) mRNA, complete cds. 11/11 None
Y39A3CR.8 ENSEMBL cdna:known chromosome:CEL140:III:1882217:1883006:-1 gene:Y39A3CR.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1882216-1883006(-) 78.31 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39A3CR.8
Entrez Gene 189729 Entrez gene
SwissProt Q9N404 EMBL-EBI
WormBase CE25262 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60530 Hypothetical protein Y39A3CR.8 [Caenorhabditis elegans] ref|NP_497470.1| Y39A3CR.8 [Caenorhabditis elegans] 5.0E-52
Sequence
Target Sequence 
>C. ELEGANS:186774_AT
gataattcaccttcatcgattttctaaaaatttgaaaaataaattaccaatttattttgt
ttcagtatcgaagggaggtgataagaagaagaaaaaggacattaagaaaattgataagga
tgctgacaaaaagaaggttgtgaaaagtgttgagaagactgctagaatgccggataagcc
cgagactggaaatactgcgaccggaaatcctgagaagcgacataaaaggaagaaaagggt
aacgaagagcaaagaacaaagagcaaagagcagagagagcaaagaggaagagagagataa
ggcaaaaagaagaaagaaattggtgcgacgtgggagggaagtagcgactcaggaagtatg
ggata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATAATTCACCTTCATCGATTTTCT 15 423 87 Antisense
TTCACCTTCATCGATTTTCTAAAAA 382 687 92 Antisense
CAATTTATTTTGTTTCAGTATCGAA 54 181 134 Antisense
GAGAAGACTGCTAGAATGCCGGATA 694 391 238 Antisense
GAATGCCGGATAAGCCCGAGACTGG 399 331 251 Antisense
AGCCCGAGACTGGAAATACTGCGAC 74 83 263 Antisense
GAAATACTGCGACCGGAAATCCTGA 462 363 275 Antisense
GACCGGAAATCCTGAGAAGCGACAT 534 379 285 Antisense
GAAAGAAATTGGTGCGACGTGGGAG 171 355 398 Antisense
GCGACGTGGGAGGGAAGTAGCGACT 168 287 411 Antisense
GTAGCGACTCAGGAAGTATGGGATA 120 457 427 Antisense
Sequence Source Affymetrix Proprietary Database