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[186773_s_at]

Description C23H4.1 /REP_DB=WormBase Gene ID /WP=CE17435 /TR=SW:Q93249 /GB=CAB01682.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 03      4grp_highest_8_8 > 54      4grp_high_8_8 > 09      6grp_highest_nonorm > 14      6grp_total > 24      4grp_total > 22      6grp_highest_sub > De      6grp_cgc > 33      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5326
1 2 3 4 range
A 7054.8
(2.8)
P 		3476.6
(-1.5)
P 		2185.2
(-3)
P 		7260
(3)
P 		5075
B 7409.3
(3)
P 		3271.1
(-1.9)
P 		2292
(-3)
P 		6506.2
(1.9)
P 		5117
C 7511.3
(3)
P 		3280
(-2)
P 		2442.5
(-3)
P 		6023
(1.2)
P 		5069
avr 7325.1
(3) 		3342.6
(-1.8) 		2306.6
(-3) 		6596.4
(2.1) 		5019

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2809
1 2 3 4 5 6 range
A 4661.5
(1.5)
P 		5346.5
(3)
P 		3279.6
(-1.4)
P 		3271.8
(-1.4)
P 		2537.4
(-3)
P 		3250.7
(-1.5)
P 		2809
B 4247.1
(3)
P 		4134.1
(2.6)
P 		3690.9
(0.9)
P 		3090.5
(-1.4)
P 		2824.7
(-2.5)
P 		2683.2
(-3)
P 		1564
C 4798.1
(2.6)
P 		4146.9
(0.9)
P 		4977.4
(3)
P 		3619.3
(-0.4)
P 		3161
(-1.6)
P 		2586.3
(-3)
P 		2391
avr 4568.9
(3) 		4542.5
(2.9) 		3982.6
(1) 		3327.2
(-1.3) 		2841
(-3) 		2840.1
(-3) 		1729
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2038
1 2 3 4 range
A 2568.7
(3)
P 		754.7
(-2.4)
P 		571.3
(-3)
P 		1062.7
(-1.5)
P 		1997
B 2362.8
(3)
P 		807.9
(-2.1)
P 		531.1
(-3)
P 		1386.5
(-0.2)
P 		1832
C 2486.5
(3)
P 		943
(-2.7)
P 		851.3
(-3)
P 		1015.6
(-2.4)
P 		1635
avr 2472.7
(3) 		835.2
(-2.4) 		651.2
(-3) 		1154.9
(-1.3) 		1822

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1187
1 2 3 4 5 6 range
A 859.3
(-2.3)
P 		1901.5
(3)
P 		714.2
(-3)
P 		829.8
(-2.4)
P 		765.7
(-2.7)
P 		791.4
(-2.6)
P 		1187
B 1477.8
(3)
P 		1376.1
(2.1)
P 		896.3
(-2.3)
P 		818.6
(-3)
P 		1147.6
(-0)
P 		1000.6
(-1.3)
P 		659
C 1778.5
(3)
P 		1265.3
(0.1)
P 		1266.8
(0.1)
P 		727.8
(-3)
P 		1022.9
(-1.3)
P 		865.8
(-2.2)
P 		1051
avr 1371.9
(1.8) 		1514.3
(3) 		959.1
(-1.6) 		792.1
(-3) 		978.7
(-1.4) 		885.9
(-2.2) 		722
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186773_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16519
Sequence Type Exemplar sequence
Representative Public ID C23H4.1 NCBI
Target Description C23H4.1 /REP_DB=WormBase Gene ID /WP=CE17435 /TR=SW:Q93249 /GB=CAB01682.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077635(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077635 NCBI Caenorhabditis elegans C-terminus-of-AEX-Binding protein family member (cab-1) (cab-1) mRNA, complete cds. 11/11 A 
SNAP00000004839 ENSEMBL cdna:SNAP chromosome:CEL140:X:12200240:12205553:-1 11/11 None
GENEFINDER00000004846 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12200240:12205553:-1 11/11 None
C23H4.1.3 ENSEMBL cdna:known chromosome:CEL140:X:12199485:12212822:-1 gene:C23H4.1 11/11 A 
C23H4.1.2 ENSEMBL cdna:known chromosome:CEL140:X:12199485:12212970:-1 gene:C23H4.1 11/11 A 
C23H4.1.1 ENSEMBL cdna:known chromosome:CEL140:X:12199485:12205555:-1 gene:C23H4.1 11/11 A 
C23H4.1.4 ENSEMBL cdna:known chromosome:CEL140:X:12199600:12212858:-1 gene:C23H4.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12200239-12205553(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cab-1
Ensembl C23H4.1
Entrez Gene 181382 Entrez gene
SwissProt Q93249 EMBL-EBI
WormBase CE17435 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5623 cell inferred from direct assay QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01682 Hypothetical protein C23H4.1 [Caenorhabditis elegans] ref|NP_510036.1| C-terminus-of-AEX-Binding protein family member (cab-1) [Caenorhabditis elegans] gb|AAG17881.1| CAB-1 [Caenorhabditis elegans] sp|Q93249|CAB1_CAEEL Protein cab-1 0.0
blast CAE69876 Hypothetical protein CBG16213 [Caenorhabditis briggsae] 1.0E-140
Protein Domains
Database ID Description E-Value
Pfam IPR009635 EMBL-EBI Neural proliferation differentiation control-1 1.4E-12
Pfam IPR009635 EMBL-EBI Neural proliferation differentiation control-1 1.4E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510036.1 1 300-322
C23H4.1.3 1 300-322
C23H4.1.2 1 300-322
C23H4.1.1 1 300-322
C23H4.1.4 1 300-322
SNAP00000004839 1 300-322
GENEFINDER00000004846 1 300-322
Sequence
Target Sequence 
>C. ELEGANS:186773_S_AT
agaagctgtccgagcagacaccttccgccaaggcgaacgtcgagtcgctcgaaagtgcga
tgcagactgccactggtgagccacaggtaccccagaaaaaaggacaaaacgagttcgtct
cgtttgtggaacaagagccccaaccagccaagcagaccatctcttctcaaaccgttgaca
aacgccgtcttgctacctcagctgagtattcaggaagtgcaccgagatacagtagcagca
gccttctgcttttagcagtcggaactgttatgtgtgttggacttattggtaccgtcgccg
gaggaacctattactacaagaacaacagacgtaccgagaccccagatgatggagagtacg
ctccatacgccggaactggaccaggattccgtaagaacaagggaaacaagggagatgaga
ctttggcctacaaagcccaactccaccagtaccagcaggcaaaacagaagatcatctgcg
gagaagatgcgccaggaatcatcgagtccgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGCTGTCCGAGCAGACACCTTC 15 73 668 Antisense
ACACCTTCCGCCAAGGCGAACGTCG 433 107 685 Antisense
GTGCGATGCAGACTGCCACTGGTGA 522 477 722 Antisense
AACCGTTGACAAACGCCGTCTTGCT 63 139 837 Antisense
GTCTTGCTACCTCAGCTGAGTATTC 145 465 854 Antisense
GTAGCAGCAGCCTTCTGCTTTTAGC 342 457 899 Antisense
TGTTGGACTTATTGGTACCGTCGCC 294 555 942 Antisense
GTCGCCGGAGGAACCTATTACTACA 547 473 961 Antisense
CTCCATACGCCGGAACTGGACCAGG 355 235 1028 Antisense
GACTTTGGCCTACAAAGCCCAACTC 567 361 1086 Antisense
TGCGCCAGGAATCATCGAGTCCGAC 60 585 1155 Antisense
Sequence Source Affymetrix Proprietary Database