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[186772_at]

Description C15H7.4 /REP_DB=WormBase Gene ID /WP=CE00082 /TR=SW:P34338 /GB=CAA80126.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 28      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 56.7
(-2.3)
A 		74.7
(2.1)
M 		54
(-3)
A 		78.3
(3)
A 		24
B 59.6
(3)
A 		39.2
(-3)
A 		39.8
(-2.8)
A 		46.1
(-1)
A 		20
C 47.6
(0.5)
A 		56.7
(1.9)
A 		25.1
(-3)
A 		63.6
(3)
P 		39
avr 54.6
(0.9) 		56.9
(1.5) 		39.6
(-3) 		62.7
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 41.1
(-1.6)
A 		33.8
(-3)
A 		33.7
(-3)
A 		34.4
(-2.9)
M 		58
(1.7)
P 		64.5
(3)
A 		31
B 22.5
(-3)
A 		45.9
(1.6)
A 		52.3
(2.9)
A 		39.1
(0.3)
A 		39.4
(0.3)
P 		52.9
(3)
P 		30
C 39.8
(-0.8)
A 		85.9
(2.9)
A 		13.2
(-3)
A 		86.7
(3)
A 		74.1
(2)
P 		78.8
(2.4)
P 		74
avr 34.5
(-2.7) 		55.2
(1.1) 		33.1
(-3) 		53.4
(0.8) 		57.2
(1.5) 		65.4
(3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 20.6
(3)
A 		16.2
(0.1)
M 		14.1
(-1.3)
A 		11.5
(-3)
A 		9
B 19
(3)
A 		9.7
(-2.7)
A 		9.2
(-3)
A 		9.8
(-2.6)
A 		10
C 15.8
(2.6)
A 		16.3
(3)
A 		8.7
(-3)
A 		10.7
(-1.4)
P 		8
avr 18.5
(3) 		14.1
(-0.4) 		10.7
(-3) 		10.7
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 7.6
(-2.8)
A 		12
(-0.2)
A 		7.3
(-3)
A 		8.7
(-2.2)
M 		17.5
(3)
P 		15.7
(1.9)
A 		10
B 7.8
(-3)
A 		15.3
(0.8)
A 		12.7
(-0.5)
A 		10.4
(-1.7)
A 		16
(1.1)
P 		19.7
(3)
P 		12
C 14.8
(-0)
A 		26.2
(2.9)
A 		3.4
(-3)
A 		17.4
(0.7)
A 		24
(2.4)
P 		26.4
(3)
P 		23
avr 10.1
(-1.9) 		17.8
(1.7) 		7.8
(-3) 		12.2
(-0.9) 		19.2
(2.3) 		20.6
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186772_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7954
Sequence Type Exemplar sequence
Representative Public ID C15H7.4 NCBI
Target Description C15H7.4 /REP_DB=WormBase Gene ID /WP=CE00082 /TR=SW:P34338 /GB=CAA80126.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066735(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066735 NCBI Caenorhabditis elegans C15H7.4 (C15H7.4) mRNA, complete cds. 11/11 None
SNAP00000039112 ENSEMBL cdna:SNAP chromosome:CEL140:III:9654305:9655755:-1 11/11 None
GENEFINDER00000039113 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9654305:9655755:-1 11/11 None
C15H7.4 ENSEMBL cdna:known chromosome:CEL140:III:9654305:9655755:-1 gene:C15H7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9654300-9655751(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C15H7.4
Entrez Gene 182640 Entrez gene
SwissProt P34338 EMBL-EBI
WormBase CE00082 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA80126 Hypothetical protein C15H7.4 [Caenorhabditis elegans] ref|NP_499136.1| C15H7.4 [Caenorhabditis elegans] sp|P34338|YK14_CAEEL Hypothetical protein C15H7.4 in chromosome III 1.0E-171
blast CAA80126 Hypothetical protein C15H7.4 [Caenorhabditis elegans] ref|NP_499136.1| C15H7.4 [Caenorhabditis elegans] sp|P34338|YK14_CAEEL Hypothetical protein C15H7.4 in chromosome III 1.0E-169
blast CAB05680 Hypothetical protein C10C6.3 [Caenorhabditis elegans] ref|NP_502163.2| C10C6.3 [Caenorhabditis elegans] 7.0E-75
blast CAB05680 Hypothetical protein C10C6.3 [Caenorhabditis elegans] ref|NP_502163.2| C10C6.3 [Caenorhabditis elegans] 2.0E-73
blast CAE66259 Hypothetical protein CBG11503 [Caenorhabditis briggsae] 2.0E-45
Sequence
Target Sequence 
>C. ELEGANS:186772_AT
acatcattgactcacgaaactcacataaaaacaccgcttcaaaatcaagaagcaacaacc
tctcctactatagaatcagatctgacagataaaccagatacaaatgtgtatacaggatca
cgagaaggatacgttgcaccatcagaaaaaggatcaaacgagaagaagaaggaagtagtt
cccaatggtggagataaatctgttgagaataagaagggatcggacagaaacgtgaaaaag
acaccttcaaaaactgtcacaaaacctctattgtctgagtcacggaaacggaaagaagcc
aaaacattagctacgacgcagtcacaagatctaccagctccaacgaaagatgaaccagag
cgtacgaattccgagcctgacaatggagaacaagaaaagattaaaaaggagaaaaagaag
ggaactgaaacatccttaaaggatgggaagaacaagttgaatgagaagatcgtgaagcca
gctccaacaacaactccagatgcaggtaatggcggattgacacctggtaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATCATTGACTCACGAAACTCACA 169 105 367 Antisense
AACTCACATAAAAACACCGCTTCAA 27 141 384 Antisense
ATCAAGAAGCAACAACCTCTCCTAC 445 25 410 Antisense
ACAACCTCTCCTACTATAGAATCAG 404 113 421 Antisense
GAGAAGGATACGTTGCACCATCAGA 153 391 488 Antisense
AAACCTCTATTGTCTGAGTCACGGA 405 125 628 Antisense
TACGACGCAGTCACAAGATCTACCA 9 649 678 Antisense
AAGATCTACCAGCTCCAACGAAAGA 360 149 692 Antisense
ACCAGAGCGTACGAATTCCGAGCCT 177 87 720 Antisense
GATCGTGAAGCCAGCTCCAACAACA 543 415 834 Antisense
AATGGCGGATTGACACCTGGTAAAG 540 161 874 Antisense
Sequence Source Affymetrix Proprietary Database