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[186770_at]

Description Y39F10A.1 /REP_DB=WormBase Gene ID /WP=CE21725 /TR=Q9TYP0 /GB=AAD12815.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 42      4grp_high_8_8 > 24      6grp_highest_nonorm > 71      6grp_total > 31      4grp_total > 55      6grp_highest_sub > 03      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 219
1 2 3 4 range
A 234.9
(3)
P 		149.8
(0.2)
P 		123.1
(-0.7)
P 		54.2
(-3)
A 		181
B 273.4
(3)
P 		77.2
(-3)
P 		186.2
(0.3)
P 		94.8
(-2.5)
M 		196
C 246.9
(3)
P 		178.4
(-0.3)
P 		120.7
(-3)
P 		166.3
(-0.8)
P 		126
avr 251.7
(3) 		135.1
(-1.8) 		143.3
(-1.4) 		105.1
(-3) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 287
1 2 3 4 5 6 range
A 244.4
(-0.3)
P 		392.9
(3)
P 		393.2
(3)
P 		353.4
(2.1)
P 		309
(1.1)
P 		125.3
(-3)
P 		268
B 216.4
(-1.3)
P 		368.3
(2.2)
P 		400.7
(3)
P 		302.2
(0.7)
P 		275.7
(0.1)
P 		145.4
(-3)
P 		255
C 251.5
(-1.1)
P 		349.9
(1.4)
P 		412.7
(3)
P 		342
(1.2)
P 		283.7
(-0.3)
P 		176.5
(-3)
P 		236
avr 237.4
(-0.9) 		370.4
(2.2) 		402.2
(3) 		332.5
(1.3) 		289.5
(0.3) 		149.1
(-3) 		253
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 85.5
(3)
P 		32.5
(-1.1)
P 		32.2
(-1.1)
P 		7.9
(-3)
A 		78
B 87.2
(3)
P 		19.1
(-3)
P 		43.2
(-0.9)
P 		20.2
(-2.9)
M 		68
C 81.7
(3)
P 		51.3
(-0.4)
P 		42.1
(-1.4)
P 		28
(-3)
P 		54
avr 84.8
(3) 		34.3
(-1.6) 		39.2
(-1.1) 		18.7
(-3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 45
(-2.2)
P 		139.7
(3)
P 		85.6
(0)
P 		89.6
(0.2)
P 		93.2
(0.4)
P 		30.5
(-3)
P 		109
B 75.3
(-1.1)
P 		122.6
(3)
P 		97.3
(0.8)
P 		80
(-0.7)
P 		112
(2.1)
P 		54.2
(-3)
P 		68
C 93.2
(1.3)
P 		106.8
(3)
P 		105
(2.8)
P 		68.8
(-1.8)
P 		91.8
(1.1)
P 		59.1
(-3)
P 		48
avr 71.2
(-1.1) 		123
(3) 		96
(0.8) 		79.5
(-0.5) 		99
(1.1) 		47.9
(-3) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186770_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5516
Sequence Type Exemplar sequence
Representative Public ID Y39F10A.1 NCBI
Target Description Y39F10A.1 /REP_DB=WormBase Gene ID /WP=CE21725 /TR=Q9TYP0 /GB=AAD12815.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061404(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061404 NCBI Caenorhabditis elegans Y39F10A.1 (Y39F10A.1) mRNA, complete cds. 11/11 None
GENEFINDER00000004795 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:775373:777185:1 11/11 None
Y39F10A.1 ENSEMBL cdna:known chromosome:CEL140:II:775373:776721:1 gene:Y39F10A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004790 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:775372-776714(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39F10A.1
Entrez Gene 173464 Entrez gene
SwissProt Q9TYP0 EMBL-EBI
WormBase CE21725 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD12815 Hypothetical protein Y39F10A.1 [Caenorhabditis elegans] ref|NP_493805.1| Y39F10A.1 [Caenorhabditis elegans] 5.0E-97
blast AAD12815 Hypothetical protein Y39F10A.1 [Caenorhabditis elegans] ref|NP_493805.1| Y39F10A.1 [Caenorhabditis elegans] 7.0E-97
blast CAE69746 Hypothetical protein CBG16021 [Caenorhabditis briggsae] 6.0E-82
blast CAE69746 Hypothetical protein CBG16021 [Caenorhabditis briggsae] 8.0E-82
Sequence
Target Sequence 
>C. ELEGANS:186770_AT
ttctccttcctttattcacattggcttttgaaattcacccgaaagaggagctcaggaaat
gcttctcgtgctccgttttcacatttatcaactcgaaacttgtatgtgcaaaccccacat
tttgccactcggatttttgctattcctacctcctctctgacggccgatctatgttcctat
ctggatgtgcagaggatttttcagattacagtatacgacctcacgacgaccatctcctat
gccatacccgcggagctgtggggctctgcgtgtgctcgagtacccaacagagctgtcacg
acttatggcctacaaaaggatcaattggaccaaaaaatatgactactcatatcaaatggg
tggatacggatgtaaaccaaatcaatgcaatttctcatagagttaccggtttctcagcgg
attacgcccgcaaccgagtcggccaaatgcgtgtggagcacttcccggagcaatttcccg
gctccccagtatcctcgggatctcggatttctgtagtttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTCCTTCCTTTATTCACATTGGC 470 693 29 Antisense
AGCTCAGGAAATGCTTCTCGTGCTC 666 79 77 Antisense
TGTGCAAACCCCACATTTTGCCACT 271 557 133 Antisense
TTTGCCACTCGGATTTTTGCTATTC 476 669 149 Antisense
GCCGATCTATGTTCCTATCTGGATG 241 285 191 Antisense
TACAGTATACGACCTCACGACGACC 652 641 235 Antisense
AGAGCTGTCACGACTTATGGCCTAC 37 71 317 Antisense
TACCGGTTTCTCAGCGGATTACGCC 161 651 432 Antisense
CAACCGAGTCGGCCAAATGCGTGTG 167 187 459 Antisense
CACTTCCCGGAGCAATTTCCCGGCT 40 187 487 Antisense
GGGATCTCGGATTTCTGTAGTTTCA 491 495 525 Antisense
Sequence Source Affymetrix Proprietary Database