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[186769_at]

Description ZK1248.15 /REP_DB=WormBase Gene ID /WP=CE02899 /TR=Q23425 /GB=AAC71096.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 96      4grp_highest_8_8 > 36      4grp_high_8_8 > 0      6grp_highest_nonorm > 95      6grp_total > 86      4grp_total > 07      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 187
1 2 3 4 range
A 465.4
(3)
P 		339.1
(-3)
P 		427.8
(1.2)
P 		464.4
(3)
P 		126
B 403.8
(1.7)
P 		371.2
(-3)
P 		413.2
(3)
P 		374.3
(-2.6)
P 		42
C 516.9
(2.5)
P 		411.7
(-3)
P 		413.2
(-2.9)
P 		525.6
(3)
P 		114
avr 462
(3) 		374
(-3) 		418.1
(0) 		454.8
(2.5) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 672
1 2 3 4 5 6 range
A 364.7
(-3)
P 		501.1
(-1.5)
P 		584.4
(-0.6)
P 		540.8
(-1.1)
P 		788.5
(1.7)
P 		908.3
(3)
P 		544
B 486
(-2.6)
P 		450.9
(-3)
P 		598.8
(-1.2)
P 		588.1
(-1.3)
P 		667.4
(-0.3)
P 		937.3
(3)
P 		486
C 349.2
(-3)
P 		517.2
(-1.5)
P 		541.6
(-1.3)
P 		579.3
(-0.9)
P 		643.8
(-0.4)
P 		1021.6
(3)
P 		672
avr 400
(-3) 		489.7
(-2) 		574.9
(-1.1) 		569.4
(-1.2) 		699.9
(0.2) 		955.7
(3) 		556
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 169.4
(3)
P 		73.6
(-2.7)
P 		111.8
(-0.4)
P 		68
(-3)
P 		101
B 128.8
(3)
P 		91.7
(-1.5)
P 		95.7
(-1.1)
P 		79.8
(-3)
P 		49
C 171.1
(3)
P 		118.4
(-0.8)
P 		144
(1)
P 		88.6
(-3)
P 		83
avr 156.4
(3) 		94.6
(-1.8) 		117.2
(-0) 		78.8
(-3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 282
1 2 3 4 5 6 range
A 67.2
(-3)
P 		178.2
(0.9)
P 		127.3
(-0.9)
P 		137.2
(-0.5)
P 		237.9
(3)
P 		221.1
(2.4)
P 		171
B 169.1
(-2.3)
P 		150.1
(-2.9)
P 		145.4
(-3)
P 		155.8
(-2.7)
P 		271.1
(0.7)
P 		349.5
(3)
P 		204
C 129.4
(-2.7)
P 		157.8
(-1.9)
P 		137.9
(-2.4)
P 		116.5
(-3)
P 		208.3
(-0.6)
P 		342
(3)
P 		226
avr 121.9
(-3) 		162
(-1.7) 		136.9
(-2.5) 		136.5
(-2.5) 		239.1
(0.9) 		304.2
(3) 		182
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186769_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5802
Sequence Type Exemplar sequence
Representative Public ID ZK1248.15 NCBI
Target Description ZK1248.15 /REP_DB=WormBase Gene ID /WP=CE02899 /TR=Q23425 /GB=AAC71096.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062761(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062761 NCBI Caenorhabditis elegans ZK1248.15 (ZK1248.15) mRNA, complete cds. 11/11 None
SNAP00000041381 ENSEMBL cdna:SNAP chromosome:CEL140:II:5836853:5839291:-1 11/11 None
GENEFINDER00000041394 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5836853:5839291:-1 11/11 None
ZK1248.15 ENSEMBL cdna:known chromosome:CEL140:II:5836777:5838518:-1 gene:ZK1248.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5836849-5839288(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1248.15
Entrez Gene 173991 Entrez gene
SwissProt Q23425 EMBL-EBI
WormBase CE29633 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4182 carboxypeptidase A activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC71096 Hypothetical protein ZK1248.15 [Caenorhabditis elegans] ref|NP_495162.1| ZK1248.15 [Caenorhabditis elegans] 0.0
blast CAE59204 Hypothetical protein CBG02516 [Caenorhabditis briggsae] 1.0E-101
blast AAQ23126 Hypothetical protein ZK1248.19 [Caenorhabditis elegans] ref|NP_001022497.1| ZK1248.19 [Caenorhabditis elegans] 1.0E-66
blast AAQ23126 Hypothetical protein ZK1248.19 [Caenorhabditis elegans] ref|NP_001022497.1| ZK1248.19 [Caenorhabditis elegans] 2.0E-66
Protein Domains
Database ID Description E-Value
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 4.2E-8
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 4.2E-8
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 4.2E-8
Sequence
Target Sequence 
>C. ELEGANS:186769_AT
gtcaattccatctacaatgaacctcaatgatcgtgctattatactcgtcaccgaggatgt
gaatctttcaaacaaagcactgactcatgatctgcacgttgagacagttaaatcattcat
ggacaccattcatggtcggaagaaacaacaaacggattcggatcaactaaatagttcaag
gaagtcttcgaattctgatagaagacaaactactaggaaagaacatcatgctaattctca
ttctaacaaatacactagcaacgacataaaatacaaaaggaacgaagctgttaaaagtgt
aaagaaacatcgcgaattggaaagttggatcaacgacttagccaaaaaagatgctggtcg
caatgctggttttgttaaagaaaacaaagtagaggctcccagaaaatctcgaccatcgat
cccactagcagacgagatcactcttcaaccgtcttcctcaaactcggaatcatttaaacc
aagaaagacatatccctcatcaacatatcaatcatctcaaaatggaaacgtagtcaagac
gaccaagccaaatagtaatcgccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAATTCCATCTACAATGAACCTC 450 463 1344 Antisense
GATCGTGCTATTATACTCGTCACCG 481 415 1372 Antisense
AGCACTGACTCATGATCTGCACGTT 661 75 1419 Antisense
GAACATCATGCTAATTCTCATTCTA 324 351 1564 Antisense
GATGCTGGTCGCAATGCTGGTTTTG 77 413 1693 Antisense
GAGGCTCCCAGAAAATCTCGACCAT 652 405 1735 Antisense
CCATCGATCCCACTAGCAGACGAGA 586 271 1756 Antisense
AGCAGACGAGATCACTCTTCAACCG 657 77 1770 Antisense
ACCGTCTTCCTCAAACTCGGAATCA 238 89 1791 Antisense
ATCCCTCATCAACATATCAATCATC 699 37 1835 Antisense
GACCAAGCCAAATAGTAATCGCCCA 351 383 1884 Antisense
Sequence Source Affymetrix Proprietary Database