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[186768_at]

Description Y105C5A.23 /REP_DB=WormBase Gene ID /WP=CE24056 /TR=Q9U320 /GB=CAB60305.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 23      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 192.4
(3)
P 		50.6
(-3)
A 		86.9
(-1.5)
A 		130.9
(0.4)
P 		142
B 171.7
(3)
P 		53.2
(-3)
A 		80.2
(-1.6)
A 		118.8
(0.3)
P 		119
C 200.8
(3)
P 		86.5
(-2)
A 		64.6
(-3)
A 		168.9
(1.6)
P 		136
avr 188.3
(3) 		63.4
(-3) 		77.2
(-2.3) 		139.5
(0.7) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 233
1 2 3 4 5 6 range
A 194.9
(3)
P 		165.6
(1.8)
P 		128.6
(0.2)
P 		80.3
(-1.9)
A 		130.9
(0.3)
M 		53.2
(-3)
P 		142
B 286.4
(3)
P 		184
(0)
P 		117.7
(-1.9)
P 		94.5
(-2.6)
A 		95.7
(-2.5)
P 		80.2
(-3)
P 		206
C 212.2
(3)
P 		206
(2.7)
P 		73.6
(-2.7)
M 		65.8
(-3)
A 		76.9
(-2.5)
A 		92
(-1.9)
P 		146
avr 231.2
(3) 		185.2
(1.2) 		106.6
(-1.8) 		80.2
(-2.8) 		101.2
(-2) 		75.1
(-3) 		156
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 70.1
(3)
P 		11
(-3)
A 		22.7
(-1.8)
A 		19.2
(-2.2)
P 		59
B 54.8
(3)
P 		13.1
(-3)
A 		18.6
(-2.2)
A 		25.3
(-1.2)
P 		42
C 66.5
(3)
P 		24.9
(-2.7)
A 		22.5
(-3)
A 		28.5
(-2.2)
P 		44
avr 63.8
(3) 		16.3
(-3) 		21.3
(-2.4) 		24.3
(-2) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 35.9
(0)
P 		58.9
(3)
P 		28
(-1)
P 		20.4
(-2)
A 		39.5
(0.5)
M 		12.9
(-3)
P 		46
B 99.6
(3)
P 		61.2
(-0.1)
P 		28.6
(-2.7)
P 		25
(-3)
A 		38.9
(-1.9)
P 		29.9
(-2.6)
P 		75
C 78.6
(3)
P 		62.9
(1.6)
P 		18.7
(-2.5)
M 		13.2
(-3)
A 		24.9
(-1.9)
A 		30.8
(-1.4)
P 		65
avr 71.4
(3) 		61
(1.8) 		25.1
(-2.4) 		19.5
(-3) 		34.4
(-1.3) 		24.5
(-2.4) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186768_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8505
Sequence Type Exemplar sequence
Representative Public ID Y105C5A.23 NCBI
Target Description Y105C5A.23 /REP_DB=WormBase Gene ID /WP=CE24056 /TR=Q9U320 /GB=CAB60305.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070486(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070486 NCBI Caenorhabditis elegans Y105C5A.23 (Y105C5A.23) mRNA, complete cds. 11/11 None
SNAP00000033718 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15820021:15829010:1 9/11 None
GENEFINDER00000033789 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15820021:15824969:1 10/11 None
Y105C5A.23 ENSEMBL cdna:known chromosome:CEL140:IV:15820021:15825579:1 gene:Y105C5A.23 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15820026-15825393(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105C5A.23
Entrez Gene 178443 Entrez gene
SwissProt Q9U320 EMBL-EBI
WormBase CE24056 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60305 Hypothetical protein Y105C5A.23 [Caenorhabditis elegans] ref|NP_502887.1| Y105C5A.23 [Caenorhabditis elegans] 0.0
blast CAE68069 Hypothetical protein CBG13695 [Caenorhabditis briggsae] 0.0
blast T31578 hypothetical protein Y105C5A.u - Caenorhabditis elegans 0.0
blast CAE68069 Hypothetical protein CBG13695 [Caenorhabditis briggsae] 1.0E-171
blast CAB60305 Hypothetical protein Y105C5A.23 [Caenorhabditis elegans] ref|NP_502887.1| Y105C5A.23 [Caenorhabditis elegans] 3.0E-92
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 7.5E-19
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 4.6E-13
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 3.6E-15
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 4.6E-13
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 2.4E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502887.1 5 36-58,155-177,221-243,345-367,382-404
Y105C5A.23 5 36-58,155-177,221-243,345-367,382-404
SNAP00000033718 2 155-172,276-298
GENEFINDER00000033789 4 36-58,155-177,221-243,347-369
Sequence
Target Sequence 
>C. ELEGANS:186768_AT
gtttgacgccgagttctggtacagcatactgcatattagtctcgttttttggatcccttg
tatcattatcatgctatcctacatcatagtcatctcatgggtatggatcaactctcggcc
gtccatccgtcacacctcttcattttccttccacaccggctgcgatacggtagatacagt
actgactagagcctctgaatggaatcctttgaagacattctcccgtcacgtcaacatcaa
ggagcccgagaagccgatgacgactcccagaatcgtggtcagcgacgagacggaggtccc
actgacgcagcgaccatcgatttctccgtcggaagcgtcggcggtgatgaggaccggtgt
gcacacgagtacctcgtataatgctaatttgaatcgatcccgagccctgcgagtttcctt
gctactagtcgtcgcgtacatcatctgctggctaccatataacctcataagtcttatcca
atttcttgatcgggactttttttcgtcatatcttaaacatgtccacttctgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGACGCCGAGTTCTGGTACAGC 638 449 633 Antisense
GGATCCCTTGTATCATTATCATGCT 341 513 683 Antisense
CATGGGTATGGATCAACTCTCGGCC 439 209 728 Antisense
AATCCTTTGAAGACATTCTCCCGTC 27 167 835 Antisense
TCTCCCGTCACGTCAACATCAAGGA 302 611 851 Antisense
GACTCCCAGAATCGTGGTCAGCGAC 217 373 894 Antisense
CACTGACGCAGCGACCATCGATTTC 171 197 932 Antisense
AGGACCGGTGTGCACACGAGTACCT 445 1 982 Antisense
CGAGTTTCCTTGCTACTAGTCGTCG 288 243 1042 Antisense
TACATCATCTGCTGGCTACCATATA 280 645 1069 Antisense
TATCTTAAACATGTCCACTTCTGCC 169 657 1141 Antisense
Sequence Source Affymetrix Proprietary Database