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[186765_s_at]

Description Y45G12C.4 /REP_DB=WormBase Gene ID /WP=CE21938 /TR=Q9N4Y2 /GB=AAF60581.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 42      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 36.9
(-1.9)
A 		135.5
(3)
M 		57.2
(-0.9)
A 		13.7
(-3)
A 		122
B 26.6
(-3)
A 		135.6
(3)
M 		86.5
(0.3)
P 		79.8
(-0.1)
A 		109
C 78.6
(-3)
A 		114.7
(3)
M 		89.6
(-1.2)
P 		114.5
(3)
A 		36
avr 47.4
(-3) 		128.6
(3) 		77.8
(-0.8) 		69.3
(-1.4) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 7.9
(-3)
A 		43.5
(-0)
A 		79.8
(3)
M 		32.3
(-1)
A 		8.5
(-2.9)
A 		36.2
(-0.6)
A 		72
B 32.4
(-1.6)
A 		52
(0.8)
M 		40
(-0.7)
A 		70.6
(3)
M 		20.6
(-3)
A 		39
(-0.8)
A 		50
C 62
(3)
A 		51.3
(0.5)
P 		36.5
(-3)
A 		44.3
(-1.2)
A 		39.8
(-2.2)
A 		54.8
(1.3)
P 		26
avr 34.1
(-0.7) 		48.9
(2.3) 		52.1
(3) 		49.1
(2.4) 		23
(-3) 		43.3
(1.2) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 13.4
(-0.5)
A 		29.4
(3)
M 		15
(-0.2)
A 		2
(-3)
A 		27
B 8.5
(-3)
A 		33.5
(3)
M 		20
(-0.2)
P 		17
(-1)
A 		25
C 26
(-0.1)
A 		33
(3)
M 		31.2
(2.2)
P 		19.3
(-3)
A 		14
avr 16
(-2) 		32
(3) 		22.1
(-0.1) 		12.8
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 1.5
(-3)
A 		15.5
(2.3)
A 		17.4
(3)
M 		8.2
(-0.5)
A 		2.6
(-2.6)
A 		8.8
(-0.2)
A 		16
B 11.3
(-1.3)
A 		17.3
(2.2)
M 		9.7
(-2.2)
A 		18.7
(3)
M 		8.4
(-3)
A 		14.5
(0.6)
A 		10
C 23
(3)
A 		15.7
(-0.1)
P 		9.3
(-2.8)
A 		8.9
(-3)
A 		12.9
(-1.3)
A 		18.4
(1)
P 		14
avr 11.9
(-0.1) 		16.2
(3) 		12.1
(0) 		11.9
(-0.1) 		8
(-3) 		13.9
(1.3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186765_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14992
Sequence Type Exemplar sequence
Representative Public ID Y45G12C.4 NCBI
Target Description Y45G12C.4 /REP_DB=WormBase Gene ID /WP=CE21938 /TR=Q9N4Y2 /GB=AAF60581.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071268(11), NM_071295(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071268 NCBI Caenorhabditis elegans F56A4.5 (F56A4.5) mRNA, complete cds. 11/11 None
NM_071295 NCBI Caenorhabditis elegans Y45G12C.4 (Y45G12C.4) mRNA, complete cds. 11/11 None
SNAP00000032939 ENSEMBL cdna:SNAP chromosome:CEL140:V:2437788:2439699:1 11/11 None
GENEFINDER00000032956 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2437788:2439699:1 11/11 None
SNAP00000043313 ENSEMBL cdna:SNAP chromosome:CEL140:V:2546067:2547978:1 11/11 None
GENEFINDER00000043324 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2546067:2547978:1 11/11 None
F56A4.5 ENSEMBL cdna:known chromosome:CEL140:V:2437788:2439699:1 gene:F56A4.5 11/11 None
Y45G12C.4 ENSEMBL cdna:known chromosome:CEL140:V:2546028:2547978:1 gene:Y45G12C.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2437748-2439699(+) 100.0 100.0
chrV:2546027-2547978(+) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl F56A4.5
Y45G12C.4
Entrez Gene 186348 Entrez gene
189933 Entrez gene
SwissProt Q9N5R6 EMBL-EBI
Q9N4Y2 EMBL-EBI
WormBase CE20882 Wormbase
CE21938 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39843 Hypothetical protein F56A4.5 [Caenorhabditis elegans] ref|NP_503669.1| F56A4.5 [Caenorhabditis elegans] 0.0
blast NP_503696 Y45G12C.4 [Caenorhabditis elegans] gb|AAF60581.1| Hypothetical protein Y45G12C.4 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004119 EMBL-EBI Protein of unknown function DUF227 1.1E-5
Pfam IPR004119 EMBL-EBI Protein of unknown function DUF227 1.1E-5
Sequence
Target Sequence 
>C. ELEGANS:186765_S_AT
aagaaatgtaccccgacgagcagctggagcgagtctgtggcgtaattcaagccacatttg
gagccaaaaaccctgctgttgtagaggaatgcattaagctgttctggatctacaaaaatt
ccatcaagagctactccaaagtttcggagcttttaggcttcaagctggtgctaaatcatg
gggacctgtggcaatcaaacatgctccattgtcttgatgagcatggaaatctggtcttga
aagcgattatcgactggcaaggagtgtcgatgttgccaccaggattggatctagcgaggc
ttttaatgggatgcctaacggcttatgagagacgagagcggggagccgagttattgatgc
tttaccatcagacattcactggaattgttggggaagagctgttcagtttggaagagctcc
aagactcttacaatctctactatccaattatgacactgacacttgtaccaatggtgtctt
ccttgttcgaaaattcagaaatgtctgaagtagaaaaaactcaggctcggctgaaaacgg
agggaaaactcttcgcattgctgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAAATGTACCCCGACGAGCAGCT 295 151 683 Antisense
GAGCAGCTGGAGCGAGTCTGTGGCG 226 387 700 Antisense
TGGAGCCAAAAACCCTGCTGTTGTA 342 549 741 Antisense
AAATCATGGGGACCTGTGGCAATCA 710 115 855 Antisense
CAAACATGCTCCATTGTCTTGATGA 295 191 878 Antisense
CAAGGAGTGTCGATGTTGCCACCAG 635 183 940 Antisense
GTTGCCACCAGGATTGGATCTAGCG 257 441 954 Antisense
ACTCTTACAATCTCTACTATCCAAT 239 101 1106 Antisense
TGACACTGACACTTGTACCAATGGT 19 573 1133 Antisense
TACCAATGGTGTCTTCCTTGTTCGA 600 649 1148 Antisense
GAGGGAAAACTCTTCGCATTGCTGG 34 403 1222 Antisense
Sequence Source Affymetrix Proprietary Database