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[186764_s_at]

Description F16G10.11 /REP_DB=WormBase Gene ID /WP=CE19400 /TR=O76596 /GB=AAC26279.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 33      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 2.9
(-3)
A 		54
(3)
A 		30.3
(0.2)
A 		11.9
(-1.9)
A 		51
B 13
(0.7)
A 		19.2
(3)
A 		10.5
(-0.2)
A 		2.8
(-3)
A 		16
C 30.8
(-0.6)
A 		6
(-3)
A 		44.8
(0.7)
A 		69.2
(3)
A 		63
avr 15.6
(-3) 		26.4
(2) 		28.5
(3) 		28
(2.8) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 4.6
(-0.3)
A 		5.8
(3)
A 		5.5
(2.2)
A 		4.5
(-0.5)
A 		4.3
(-1.1)
A 		3.6
(-3)
A 		2
B 3.2
(-3)
A 		5.6
(-2.3)
A 		4.3
(-2.7)
A 		23
(3)
A 		5.5
(-2.3)
A 		3.5
(-2.9)
A 		20
C 3.7
(-2.8)
A 		19.8
(-0.4)
A 		42.8
(3)
A 		8.4
(-2.1)
A 		2.2
(-3)
A 		4.7
(-2.6)
A 		41
avr 3.8
(-3) 		10.4
(-0.1) 		17.5
(3) 		12
(0.6) 		4
(-2.9) 		3.9
(-3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 1.1
(-3)
A 		11.7
(3)
A 		7.9
(0.8)
A 		1.7
(-2.7)
A 		11
B 4.1
(2.1)
A 		4.7
(3)
A 		2.4
(-0.4)
A 		0.6
(-3)
A 		4
C 10.2
(0.7)
A 		1.7
(-3)
A 		15.6
(3)
A 		11.7
(1.3)
A 		14
avr 5.1
(-2.4) 		6
(-1) 		8.6
(3) 		4.7
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.9
(-3)
A 		2.1
(3)
A 		1.2
(-1.5)
A 		1.1
(-2)
A 		1.3
(-1)
A 		0.9
(-3)
A 		1
B 1.1
(-2.9)
A 		1.9
(-1.9)
A 		1
(-3)
A 		6.1
(3)
A 		2.2
(-1.6)
A 		1.3
(-2.6)
A 		5
C 1.4
(-2.6)
A 		6
(0.1)
A 		10.9
(3)
A 		1.7
(-2.4)
A 		0.7
(-3)
A 		1.6
(-2.5)
A 		10
avr 1.1
(-3) 		3.3
(1) 		4.4
(3) 		3
(0.5) 		1.4
(-2.5) 		1.3
(-2.6) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186764_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4332
Sequence Type Exemplar sequence
Representative Public ID F16G10.11 NCBI
Target Description F16G10.11 /REP_DB=WormBase Gene ID /WP=CE19400 /TR=O76596 /GB=AAC26279.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061864(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061864 NCBI Caenorhabditis elegans F16G10.11 (F16G10.11) mRNA, complete cds. 11/11 None
GENEFINDER00000023137 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2391975:2393856:-1 11/11 None
GENEFINDER00000025979 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3765355:3766544:-1 11/11 None
F16G10.11 ENSEMBL cdna:known chromosome:CEL140:II:2391646:2393922:-1 gene:F16G10.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076248 8/11 Cross Hyb Matching Probes None
SNAP00000023122 8/11 Cross Hyb Matching Probes None
SNAP00000025967 8/11 Cross Hyb Matching Probes None
F47B7.4 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3763043-3766611(-) 94.44 94.44
chrII:2391644-2393921(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F16G10.11
Entrez Gene 184585 Entrez gene
SwissProt O76596 EMBL-EBI
WormBase CE19400 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26279 Hypothetical protein F16G10.11 [Caenorhabditis elegans] ref|NP_494265.1| F16G10.11 [Caenorhabditis elegans] 1.0E-107
blast AAC26279 Hypothetical protein F16G10.11 [Caenorhabditis elegans] ref|NP_494265.1| F16G10.11 [Caenorhabditis elegans] 1.0E-87
blast AAC26279 Hypothetical protein F16G10.11 [Caenorhabditis elegans] ref|NP_494265.1| F16G10.11 [Caenorhabditis elegans] 7.0E-83
blast AAA80368 Hypothetical protein F47B7.4 [Caenorhabditis elegans] ref|NP_508649.2| F47B7.4 [Caenorhabditis elegans] 3.0E-78
blast AAA80368 Hypothetical protein F47B7.4 [Caenorhabditis elegans] ref|NP_508649.2| F47B7.4 [Caenorhabditis elegans] 6.0E-78
blast AAA80368 Hypothetical protein F47B7.4 [Caenorhabditis elegans] ref|NP_508649.2| F47B7.4 [Caenorhabditis elegans] 2.0E-74
blast AAC26280 Hypothetical protein F16G10.13 [Caenorhabditis elegans] ref|NP_494266.1| F16G10.13 [Caenorhabditis elegans] 3.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 5.7E-78
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 3.7E-65
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 1.8E-64
Sequence
Target Sequence 
>C. ELEGANS:186764_S_AT
cccctggcctgttgccatatggttatggctcccttgtaggaaccgaactaactggatttt
atatacctcctggagaggatacatttgtaagtgggagactcatcagaccagtgaccctga
cagaattaaatggcggcacagtaaatgatttttttggaatctcatgtgagaacaataagt
tgatcgtctcaaaatacccacgtggaatttctgttggcatcacgcctgtgggcacagatg
cagctgatgatttgaccatgaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCCTGGCCTGTTGCCATATGGTTA 380 259 401 Antisense
TGTAGGAACCGAACTAACTGGATTT 108 561 435 Antisense
AACTGGATTTTATATACCTCCTGGA 62 137 450 Antisense
ATACCTCCTGGAGAGGATACATTTG 308 23 463 Antisense
TGGGAGACTCATCAGACCAGTGACC 150 555 492 Antisense
GACCAGTGACCCTGACAGAATTAAA 362 383 506 Antisense
ATGGCGGCACAGTAAATGATTTTTT 74 51 530 Antisense
GTTGATCGTCTCAAAATACCCACGT 648 435 579 Antisense
ATACCCACGTGGAATTTCTGTTGGC 708 21 594 Antisense
AATTTCTGTTGGCATCACGCCTGTG 616 173 606 Antisense
GCAGCTGATGATTTGACCATGAATG 512 313 640 Antisense
Sequence Source Affymetrix Proprietary Database