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[186763_at] 7TM chemoreceptor, sre family

Description C50E10.11 /REP_DB=WormBase Gene ID /WP=CE19765 /TR=Q9TZJ1 /GB=AAC67441.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 19      6grp_cgc > 97      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 25.7
(-0.7)
A 		18.8
(-3)
A 		30.1
(0.7)
A 		37.1
(3)
A 		18
B 28.5
(1.3)
A 		25.8
(0.7)
A 		10.2
(-3)
A 		35.6
(3)
A 		25
C 24.1
(-2)
A 		65.2
(0.5)
A 		8.5
(-3)
A 		105.9
(3)
P 		97
avr 26.1
(-1.6) 		36.6
(-0.2) 		16.3
(-3) 		59.5
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 37.6
(3)
A 		6.4
(-2.4)
A 		14.7
(-1)
A 		32.8
(2.2)
A 		26.1
(1)
A 		3.2
(-3)
A 		34
B 25.9
(0.6)
A 		39.1
(3)
A 		6.2
(-3)
A 		19.7
(-0.5)
A 		11.4
(-2.1)
A 		19.3
(-0.6)
A 		33
C 7.4
(-2.3)
A 		6.3
(-2.5)
A 		5.5
(-2.7)
A 		12.8
(-1.3)
A 		36.5
(3)
A 		3.7
(-3)
A 		33
avr 23.6
(2.6) 		17.3
(0.2) 		8.8
(-3) 		21.8
(1.9) 		24.7
(3) 		8.7
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 9.4
(3)
A 		4.1
(-3)
A 		7.9
(1.3)
A 		5.4
(-1.5)
A 		5
B 9.1
(3)
A 		6.4
(0.6)
A 		2.4
(-3)
A 		7.6
(1.7)
A 		7
C 8
(-1.1)
A 		18.8
(3)
A 		3
(-3)
A 		17.9
(2.7)
P 		16
avr 8.8
(1.5) 		9.8
(2.5) 		4.4
(-3) 		10.3
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 6.9
(1.9)
A 		2.3
(-1.8)
A 		3.2
(-1.1)
A 		8.3
(3)
A 		7.9
(2.7)
A 		0.8
(-3)
A 		8
B 9
(0.9)
A 		13
(3)
A 		1.5
(-3)
A 		5.2
(-1.1)
A 		4.6
(-1.4)
A 		7.2
(-0)
A 		12
C 2.8
(-2.1)
A 		1.9
(-2.6)
A 		1.4
(-2.9)
A 		2.6
(-2.2)
A 		11.8
(3)
A 		1.2
(-3)
A 		11
avr 6.2
(1.1) 		5.7
(0.6) 		2
(-3) 		5.4
(0.3) 		8.1
(3) 		3.1
(-1.9) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186763_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3519
Sequence Type Exemplar sequence
Representative Public ID C50E10.11 NCBI
Target Description C50E10.11 /REP_DB=WormBase Gene ID /WP=CE19765 /TR=Q9TZJ1 /GB=AAC67441.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064211(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064211 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-50) (sre-50) mRNA, complete cds. 10/11 None
C50E10.11 ENSEMBL cdna:known chromosome:CEL140:II:12303377:12305035:1 gene:C50E10.11 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034840 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12303373-12305032(+) 97.39 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sre family
Gene Symbol sre-50
Ensembl C50E10.11
Entrez Gene 183672 Entrez gene
SwissProt Q965I2 EMBL-EBI
WormBase CE38165 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_496612 Serpentine Receptor, class E (epsilon) family member (sre-50) [Caenorhabditis elegans] gb|AAK73860.3| Serpentine receptor, class e (epsilon) protein 50 [Caenorhabditis elegans] 0.0
blast NP_496617 Serpentine Receptor, class E (epsilon) family member (sre-56) [Caenorhabditis elegans] gb|AAK73867.1| Serpentine receptor, class e (epsilon) protein 56 [Caenorhabditis elegans] 5.0E-78
blast NP_496616 Serpentine Receptor, class E (epsilon) family member (sre-53) [Caenorhabditis elegans] gb|AAK73862.2| Serpentine receptor, class e (epsilon) protein 53 [Caenorhabditis elegans] 1.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 5.5E-47
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 5.5E-47
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496612.2 7 23-45,58-80,123-145,166-188,192-214,252-274,289-311
C50E10.11 7 40-62,75-97,140-162,183-205,209-231,269-291,306-328
Sequence
Target Sequence 
>C. ELEGANS:186763_AT
tcgattgagcggcggtttgccacgtggctcatcgaaaattatgagaatactgcgagagtc
tatctgcgggttttattgattttcgggcagcagatattgattttttcactggtctacgtg
acgtttttcaatttaatcaattttctggcaatggctgggtttctcgtggcgatgaacatt
tttgccacgtggctttttgtgggaaatcgattcacgaatttgagaattctacgagagttt
gatcggaactcgatgcttcctctaaccctgcgtatattcctcgttggttttattggcata
atatttgttttcacttgtgtaattattttggttttcgactttttccccgaattcgatatt
tttatagtctatttttttgataacatgatccatttaaaccccctagtcacatgccctgtg
ctcattttctccgtgagcacctggagcaaagcactgctccgactgtcgtggatctctaaa
ttcaataaaatgacatctgaaaatgctcacaaagtacatccgaagccaactcagcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGATTGAGCGGCGGTTTGCCACGT 135 587 502 Antisense
TTGCCACGTGGCTCATCGAAAATTA 334 699 518 Antisense
GAGAGTCTATCTGCGGGTTTTATTG 522 395 555 Antisense
TTTCTGGCAATGGCTGGGTTTCTCG 522 671 643 Antisense
TGATCGGAACTCGATGCTTCCTCTA 433 563 741 Antisense
CCTGCGTATATTCCTCGTTGGTTTT 483 261 768 Antisense
TCGACTTTTTCCCCGAATTCGATAT 361 601 836 Antisense
TAACATGATCCATTTAAACCCCCTA 284 637 882 Antisense
ATTTTCTCCGTGAGCACCTGGAGCA 185 15 925 Antisense
TGCTCCGACTGTCGTGGATCTCTAA 191 581 956 Antisense
GTACATCCGAAGCCAACTCAGCAAC 583 459 1015 Antisense
Sequence Source Affymetrix Proprietary Database