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[186762_s_at]

Description Y18D10A.11 /REP_DB=WormBase Gene ID /WP=CE21407 /TR=Q9XW20 /GB=CAA22314.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 0      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 8.3
(-3)
A 		10.4
(-1.4)
A 		13.9
(1.4)
A 		16
(3)
A 		8
B 2.8
(-3)
A 		4.1
(-2.8)
A 		37.2
(3)
A 		33.9
(2.4)
A 		34
C 23.4
(-2.6)
A 		13.7
(-3)
A 		44.7
(-1.7)
A 		151.5
(3)
M 		138
avr 11.5
(-2.8) 		9.4
(-3) 		31.9
(-0.7) 		67.1
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 319
1 2 3 4 5 6 range
A 12.6
(-2.9)
A 		12.4
(-2.9)
A 		9.2
(-3)
A 		84.3
(-1.5)
A 		167.3
(0.1)
P 		312.5
(3)
P 		303
B 3.9
(-3)
A 		4.4
(-3)
A 		5.9
(-3)
A 		106.2
(-1)
A 		221.8
(1.3)
P 		309.2
(3)
P 		305
C 2.6
(-3)
A 		21.4
(-2.6)
A 		21.2
(-2.7)
A 		45.3
(-2.2)
A 		209.3
(0.9)
P 		321.6
(3)
P 		319
avr 6.4
(-3) 		12.7
(-2.9) 		12.1
(-2.9) 		78.6
(-1.6) 		199.5
(0.8) 		314.4
(3) 		308
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 3
(0.2)
A 		2.3
(-3)
A 		3.6
(3)
A 		2.3
(-3)
A 		1
B 0.9
(-3)
A 		1
(-2.9)
A 		8.6
(3)
A 		7.2
(1.9)
A 		8
C 7.7
(-2)
A 		4
(-3)
A 		15.6
(0.2)
A 		25.5
(3)
M 		22
avr 3.9
(-2) 		2.4
(-3) 		9.3
(1.5) 		11.7
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 2.3
(-3)
A 		4.4
(-2.8)
A 		2
(-3)
A 		21.4
(-1.4)
A 		50.5
(0.9)
P 		76.1
(3)
P 		74
B 1.3
(-3)
A 		1.5
(-3)
A 		1.4
(-3)
A 		28.1
(-1.6)
A 		90.1
(1.7)
P 		115.3
(3)
P 		114
C 1
(-3)
A 		6.5
(-2.7)
A 		5.4
(-2.8)
A 		9.1
(-2.5)
A 		67.7
(0.8)
P 		107.7
(3)
P 		107
avr 1.5
(-3) 		4.1
(-2.8) 		2.9
(-2.9) 		19.5
(-1.9) 		69.4
(1.1) 		99.7
(3) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186762_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.643
Sequence Type Exemplar sequence
Representative Public ID Y18D10A.11 NCBI
Target Description Y18D10A.11 /REP_DB=WormBase Gene ID /WP=CE21407 /TR=Q9XW20 /GB=CAA22314.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060848(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060848 NCBI Caenorhabditis elegans Y18D10A.11 (Y18D10A.11) mRNA, complete cds. 11/11 None
SNAP00000000417 ENSEMBL cdna:SNAP chromosome:CEL140:I:12870359:12871556:-1 11/11 None
GENEFINDER00000000467 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12870359:12871556:-1 11/11 None
Y18D10A.11 ENSEMBL cdna:known chromosome:CEL140:I:12870178:12871561:-1 gene:Y18D10A.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12870289-12871487(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y18D10A.11
Entrez Gene 173153 Entrez gene
SwissProt Q9XW20 EMBL-EBI
WormBase CE21407 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22314 Hypothetical protein Y18D10A.11 [Caenorhabditis elegans] ref|NP_493249.1| Y18D10A.11 [Caenorhabditis elegans] 1.0E-114
blast CAE58928 Hypothetical protein CBG02193 [Caenorhabditis briggsae] 4.0E-32
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493249.1 1 228-247
Y18D10A.11 1 228-247
SNAP00000000417 1 228-247
GENEFINDER00000000467 1 228-247
Sequence
Target Sequence 
>C. ELEGANS:186762_S_AT
tcgatgcggcgttgtcaccgagaaaggacagaataactcaactggaatctcgcctcgaag
ttgtgcaacaagctgccaaagctcaacagaagcggtgggaaggggagctcgcttcatcga
gagctcaaaatgagcaactatccgaagagaaaagtcagctgcagaaggagaatgaggagc
ttctactggtattgctgcgtaccgagggaatcgtcgacgccaacaaatcactcagtgagc
agctggcgaatgcacaagacgcggaggtgtcgatgactactttgaaagagacagttgcca
agctggaagaggagaacaacgtccttcaagccacgtgggccgaggagcgatctggactcg
tcaacgagctcatcgacaccaaggaaaagctggcgaagtcggctcaggctcaaaccgagc
tcgacgagagccacagagatatcatgactgcagtgccagttgcgaagcgcacggcaatgg
acgaaatgttcccggaactggacccagccattcgccaactcgttcatctcatcggccaga
acgagaactacatgtatgcggccgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGATGCGGCGTTGTCACCGAGAAA 434 601 146 Antisense
ATAACTCAACTGGAATCTCGCCTCG 407 25 178 Antisense
ATCTCGCCTCGAAGTTGTGCAACAA 328 33 192 Antisense
GGAGCTTCTACTGGTATTGCTGCGT 475 519 321 Antisense
GCTGCGTACCGAGGGAATCGTCGAC 631 291 339 Antisense
TCGACGCCAACAAATCACTCAGTGA 104 603 359 Antisense
TCAAGCCACGTGGGCCGAGGAGCGA 524 631 471 Antisense
AAAGCTGGCGAAGTCGGCTCAGGCT 706 123 531 Antisense
TCGGCTCAGGCTCAAACCGAGCTCG 369 607 544 Antisense
GTGCCAGTTGCGAAGCGCACGGCAA 138 479 598 Antisense
CGAGAACTACATGTATGCGGCCGCC 167 251 687 Antisense
Sequence Source Affymetrix Proprietary Database