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[186761_at]

Description C08F8.1 /REP_DB=WormBase Gene ID /WP=CE05248 /TR=SW:Q17827 /GB=CAA97424.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 43      4grp_highest_8_8 > 05      4grp_high_8_8 > 30      6grp_highest_nonorm > 33      6grp_total > 20      4grp_total > 24      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 822
1 2 3 4 range
A 1300.4
(-3)
P 		1925.7
(3)
P 		1610.5
(-0)
P 		1703.5
(0.9)
P 		625
B 1457.6
(-3)
P 		1716.6
(-0.7)
P 		1928.9
(1.3)
P 		2122.3
(3)
P 		665
C 1520.5
(-3)
P 		1571.8
(-2.3)
P 		1891.2
(1.9)
P 		1971.4
(3)
P 		451
avr 1426.2
(-3) 		1738
(0.7) 		1810.2
(1.6) 		1932.4
(3) 		506

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 890
1 2 3 4 5 6 range
A 1304.1
(-2.5)
P 		2033.1
(3)
P 		1760.8
(0.9)
P 		1974.4
(2.6)
P 		1236.2
(-3)
P 		1362.7
(-2)
P 		797
B 1492
(-2.2)
P 		2126
(3)
P 		2025.5
(2.2)
P 		1398
(-3)
P 		1468.3
(-2.4)
P 		1569.4
(-1.6)
P 		728
C 1644.8
(0.5)
P 		1934.3
(3)
P 		1813.7
(2)
P 		1544.3
(-0.4)
P 		1236.8
(-3)
P 		1555.8
(-0.3)
P 		698
avr 1480.3
(-1.6) 		2031.1
(3) 		1866.7
(1.6) 		1638.9
(-0.3) 		1313.8
(-3) 		1496
(-1.5) 		717
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 410
1 2 3 4 range
A 473.5
(3)
P 		418
(1.5)
P 		421
(1.6)
P 		249.4
(-3)
P 		224
B 464.8
(3)
P 		424
(-3)
P 		447
(0.4)
P 		452.3
(1.2)
P 		41
C 503.3
(0.1)
P 		451.9
(-0.8)
P 		659.1
(3)
P 		332.4
(-3)
P 		327
avr 480.5
(2) 		431.3
(0.2) 		509
(3) 		344.7
(-3) 		164

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 483
1 2 3 4 5 6 range
A 240.4
(-3)
P 		723.1
(3)
P 		383.5
(-1.2)
P 		500.7
(0.2)
P 		373
(-1.4)
P 		331.8
(-1.9)
P 		483
B 519.1
(-0.4)
P 		707.7
(3)
P 		491.9
(-0.8)
P 		370.3
(-3)
P 		596.6
(1)
P 		585.2
(0.8)
P 		337
C 609.6
(3)
P 		590.2
(2.6)
P 		461.6
(0)
P 		310.6
(-3)
P 		400.2
(-1.2)
P 		520.8
(1.2)
P 		299
avr 456.4
(-1.7) 		673.7
(3) 		445.7
(-1.9) 		393.9
(-3) 		456.6
(-1.7) 		479.3
(-1.2) 		280
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186761_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8750
Sequence Type Exemplar sequence
Representative Public ID C08F8.1 NCBI
Target Description C08F8.1 /REP_DB=WormBase Gene ID /WP=CE05248 /TR=SW:Q17827 /GB=CAA97424.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069688(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069688 NCBI Caenorhabditis elegans C08F8.1 (C08F8.1) mRNA, complete cds. 11/11 None
SNAP00000012973 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11150087:11150794:1 11/11 None
GENEFINDER00000012990 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11150087:11150794:1 11/11 None
C08F8.1 ENSEMBL cdna:known chromosome:CEL140:IV:11150083:11150901:1 gene:C08F8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11150092-11150800(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08F8.1
Entrez Gene 178021 Entrez gene
SwissProt Q17827 EMBL-EBI
WormBase CE05248 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97424 Hypothetical protein C08F8.1 [Caenorhabditis elegans] ref|NP_502089.1| C08F8.1 [Caenorhabditis elegans] sp|Q17827|PFD1_CAEEL Probable prefoldin subunit 4.0E-59
blast CAE62013 Hypothetical protein CBG06021 [Caenorhabditis briggsae] 2.0E-52
blast CAF97334 unnamed protein product [Tetraodon nigroviridis] 4.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR002777 EMBL-EBI Prefoldin-related KE2 protein 3.3E-30
Sequence
Target Sequence 
>C. ELEGANS:186761_AT
atggccgacgaggagatctcaaaagcgtttcgcgacttgcaattcaaaaccaatgaaaca
cgaatgcggatagttcaaggagaacaaaataagaaagttaactatcagaaaatgaggatc
tcagagagcacaaaaaagaacttggtggatttggatgaaaacctcaagtactatcgatct
gttgggcgtatgttcctgctgaccgacaaaccagctgaaatttccagacatgaagctgaa
gctaaacagtcaaaagagaaaattgaagctatcgagaagcagaaagactatttggagaaa
ggattggtggaggctgaaacgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCCGACGAGGAGATCTCAAAAG 523 51 13 Antisense
GGAGATCTCAAAAGCGTTTCGCGAC 292 519 24 Antisense
GCGTTTCGCGACTTGCAATTCAAAA 276 291 37 Antisense
GAAACACGAATGCGGATAGTTCAAG 201 353 67 Antisense
GAAAACCTCAAGTACTATCGATCTG 37 355 169 Antisense
ACTATCGATCTGTTGGGCGTATGTT 160 103 182 Antisense
CGATCTGTTGGGCGTATGTTCCTGC 267 249 187 Antisense
TGTTCCTGCTGACCGACAAACCAGC 622 561 203 Antisense
GACCGACAAACCAGCTGAAATTTCC 133 383 213 Antisense
AACCAGCTGAAATTTCCAGACATGA 64 149 221 Antisense
AAGGATTGGTGGAGGCTGAAACGAA 565 149 311 Antisense
Sequence Source Affymetrix Proprietary Database