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[186760_at]

Description Y51H7C.13 /REP_DB=WormBase Gene ID /WP=CE22357 /TR=Q9N3I1 /GB=AAK39331.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 43      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 20.9
(-3)
A 		27.9
(3)
A 		21.1
(-2.8)
A 		27
(2.2)
A 		7
B 22.9
(-0.1)
A 		35
(3)
A 		18.5
(-1.2)
A 		11.7
(-3)
A 		23
C 18.2
(-3)
A 		27.9
(3)
A 		20.4
(-1.6)
A 		25.4
(1.5)
A 		10
avr 20.7
(-2.6) 		30.3
(3) 		20
(-3) 		21.4
(-2.2) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2928
1 2 3 4 5 6 range
A 27.9
(-3)
A 		18.8
(-3)
A 		13.5
(-3)
A 		216.7
(-2.5)
P 		2372.3
(3)
P 		2276.6
(2.8)
P 		2359
B 22.6
(-3)
A 		10.6
(-3)
A 		20.5
(-3)
A 		226.7
(-2.3)
P 		1984
(3)
P 		1512.2
(1.6)
P 		1973
C 21.3
(-3)
A 		15.7
(-3)
A 		24.4
(-3)
A 		165.9
(-2.7)
P 		2938.2
(3)
P 		1226.4
(-0.5)
P 		2923
avr 23.9
(-3) 		15
(-3) 		19.5
(-3) 		203.1
(-2.5) 		2431.5
(3) 		1671.7
(1.1) 		2417
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 7.6
(3)
A 		6.1
(0.5)
A 		5.5
(-0.5)
A 		4
(-3)
A 		4
B 7.3
(1.6)
A 		8.7
(3)
A 		4.3
(-1.3)
A 		2.5
(-3)
A 		6
C 6
(-0.2)
A 		8
(3)
A 		7.1
(1.5)
A 		4.3
(-3)
A 		4
avr 7
(2.1) 		7.6
(3) 		5.6
(-0) 		3.6
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 948
1 2 3 4 5 6 range
A 5.1
(-3)
A 		6.7
(-3)
A 		2.9
(-3)
A 		55
(-2.6)
P 		715.9
(3)
P 		554.3
(1.6)
P 		713
B 7.9
(-3)
A 		3.5
(-3)
A 		5
(-3)
A 		60
(-2.6)
P 		806.1
(3)
P 		563.9
(1.2)
P 		803
C 7.9
(-3)
A 		4.8
(-3)
A 		6.2
(-3)
A 		33.4
(-2.8)
P 		950.7
(3)
P 		410.5
(-0.4)
P 		946
avr 7
(-3) 		5
(-3) 		4.7
(-3) 		49.5
(-2.7) 		824.2
(3) 		509.6
(0.7) 		820
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186760_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5144
Sequence Type Exemplar sequence
Representative Public ID Y51H7C.13 NCBI
Target Description Y51H7C.13 /REP_DB=WormBase Gene ID /WP=CE22357 /TR=Q9N3I1 /GB=AAK39331.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061575(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061575 NCBI Caenorhabditis elegans Y51H7C.13 (Y51H7C.13) mRNA, complete cds. 9/11 None
SNAP00000035537 ENSEMBL cdna:SNAP chromosome:CEL140:II:1463351:1466550:-1 11/11 None
GENEFINDER00000035541 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1463351:1466550:-1 11/11 None
Y51H7C.13 ENSEMBL cdna:known chromosome:CEL140:II:1463351:1466550:-1 gene:Y51H7C.13 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1463349-1466549(-) 96.87 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51H7C.13
Entrez Gene 190180 Entrez gene
SwissProt Q9N3I1 EMBL-EBI
WormBase CE36040 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39331 Hypothetical protein Y51H7C.13 [Caenorhabditis elegans] ref|NP_493976.2| Y51H7C.13 [Caenorhabditis elegans] 1.0E-157
blast AAK39331 Hypothetical protein Y51H7C.13 [Caenorhabditis elegans] ref|NP_493976.2| Y51H7C.13 [Caenorhabditis elegans] 1.0E-99
blast AAK39336 Hypothetical protein Y51H7C.1 [Caenorhabditis elegans] ref|NP_493977.1| Y51H7C.1 [Caenorhabditis elegans] 4.0E-50
blast AAK31537 Collagen protein 70 [Caenorhabditis elegans] ref|NP_493978.1| H17B01.2 [Caenorhabditis elegans] 1.0E-47
blast AAK39336 Hypothetical protein Y51H7C.1 [Caenorhabditis elegans] ref|NP_493977.1| Y51H7C.1 [Caenorhabditis elegans] 2.0E-37
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493976.2 1 5-27
Y51H7C.13 1 5-27
SNAP00000035537 1 5-27
GENEFINDER00000035541 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:186760_AT
ctccgacctacgttattccgaagattacaacgactacagagactacaacgactacaaaag
ctacaattccagatttttatctaattccagaatataccacccaaccaccagcaacatggc
cccccgttgagaacactaccccagaacagcctaccgtaccaaccccgggaccttccagag
aatgctgctacatcgatctccgtaccctccaggctaccgtatcctgtggagttgctattg
gaaccaagtgctgccaccaatcctgctccgggacctcccagcggcagatcaccctgaact
acgatatcatcgcccgcctcttcccgaaccttccatcccaaattcaatgctccgaggctg
ttcgtctgggactagtccagtcaaccgagattcagggagtctgtaccagatatgagccat
atccagtgccaactgaaaatcctccaagcccaactaactacccaccagaagtcacaactg
gatccccaggtggagaggtcgaaattccaaccaatggaccagtagatgcctacgtggtcc
agacaactacaagctccgctccaatcttagcttcattgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCGACCTACGTTATTCCGAAGAT 31 235 581 Antisense
TAATTCCAGAATATACCACCCAACC 35 635 662 Antisense
CGTTGAGAACACTACCCCAGAACAG 451 245 705 Antisense
TTGGAACCAAGTGCTGCCACCAATC 361 707 818 Antisense
GCAGATCACCCTGAACTACGATATC 360 313 864 Antisense
ACCTTCCATCCCAAATTCAATGCTC 539 87 908 Antisense
ACTAGTCCAGTCAACCGAGATTCAG 487 101 951 Antisense
ATGAGCCATATCCAGTGCCAACTGA 657 45 992 Antisense
CAGAAGTCACAACTGGATCCCCAGG 266 205 1046 Antisense
AGATGCCTACGTGGTCCAGACAACT 656 65 1104 Antisense
CGCTCCAATCTTAGCTTCATTGCTC 692 255 1137 Antisense
Sequence Source Affymetrix Proprietary Database