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[186759_at]

Description F13G3.3 /REP_DB=WormBase Gene ID /WP=CE27124 /TR=SW:Q19417 /GB=CAA95788.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 11      4grp_high_8_8 > 46      6grp_total > 13      4grp_total > 50      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 65.5
(-3)
P 		191.1
(3)
P 		146.9
(0.9)
P 		86.5
(-2)
P 		126
B 70.5
(-0.9)
P 		164.6
(3)
P 		122.1
(1.2)
P 		20.5
(-3)
A 		144
C 76.8
(-3)
P 		147
(2.4)
P 		155.2
(3)
P 		117.4
(0.1)
P 		78
avr 70.9
(-3) 		167.6
(3) 		141.4
(1.4) 		74.8
(-2.8) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 202.9
(3)
P 		149.7
(1.4)
P 		62.4
(-1.3)
P 		123.7
(0.6)
P 		31.2
(-2.2)
A 		6.6
(-3)
A 		196
B 96.6
(0.9)
P 		132.2
(3)
P 		83.2
(0.1)
A 		82.7
(0.1)
M 		73.2
(-0.5)
P 		31
(-3)
P 		101
C 123.4
(2.6)
P 		103.3
(1.2)
P 		130
(3)
P 		83.9
(-0.1)
A 		59.6
(-1.7)
M 		40
(-3)
A 		90
avr 141
(3) 		128.4
(2.3) 		91.9
(0.4) 		96.8
(0.7) 		54.7
(-1.5) 		25.9
(-3) 		115
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 23.9
(-0.7)
P 		41.5
(3)
P 		38.4
(2.4)
P 		12.7
(-3)
P 		29
B 22.5
(-0)
P 		40.7
(3)
P 		28.3
(1)
P 		4.4
(-3)
A 		36
C 25.4
(-2)
P 		42.3
(0.9)
P 		54.1
(3)
P 		19.8
(-3)
P 		34
avr 23.9
(-0.6) 		41.5
(3) 		40.3
(2.8) 		12.3
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 37.4
(1.2)
P 		53.2
(3)
P 		13.6
(-1.6)
P 		31.4
(0.5)
P 		9.4
(-2.1)
A 		1.6
(-3)
A 		52
B 33.6
(1.1)
P 		44
(3)
P 		20.2
(-1.4)
A 		21.9
(-1.1)
M 		29.7
(0.4)
P 		11.6
(-3)
P 		32
C 45.7
(3)
P 		31.5
(0.4)
P 		33.1
(0.7)
P 		16.9
(-2.3)
A 		19.3
(-1.9)
M 		13.4
(-3)
A 		32
avr 38.9
(2.3) 		42.9
(3) 		22.3
(-0.6) 		23.4
(-0.4) 		19.5
(-1.1) 		8.9
(-3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186759_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1603
Sequence Type Exemplar sequence
Representative Public ID F13G3.3 NCBI
Target Description F13G3.3 /REP_DB=WormBase Gene ID /WP=CE27124 /TR=SW:Q19417 /GB=CAA95788.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059661(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059661 NCBI Caenorhabditis elegans F13G3.3 (F13G3.3) mRNA, complete cds. 11/11 A 
SNAP00000006937 ENSEMBL cdna:SNAP chromosome:CEL140:I:7305076:7307237:-1 10/11 None
GENEFINDER00000006952 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7305076:7308093:-1 11/11 None
F13G3.3 ENSEMBL cdna:known chromosome:CEL140:I:7305066:7308108:-1 gene:F13G3.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7305642-7308024(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13G3.3
Entrez Gene 172475 Entrez gene
SwissProt Q19417 EMBL-EBI
WormBase CE27124 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA95788 Hypothetical protein F13G3.3 [Caenorhabditis elegans] ref|NP_492062.1| F13G3.3 [Caenorhabditis elegans] sp|Q19417|YSNK_CAEEL Hypothetical protein F13G3.3 in chromosome I 0.0
blast CAE74214 Hypothetical protein CBG21896 [Caenorhabditis briggsae] 0.0
blast T20852 hypothetical protein F13G3.3 - Caenorhabditis elegans 0.0
blast CAA95788 Hypothetical protein F13G3.3 [Caenorhabditis elegans] ref|NP_492062.1| F13G3.3 [Caenorhabditis elegans] sp|Q19417|YSNK_CAEEL Hypothetical protein F13G3.3 in chromosome I 1.0E-158
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 2.6E-63
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 9.6E-31
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492062.1 1 5-27
F13G3.3 1 5-27
GENEFINDER00000006952 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:186759_AT
tggcacaatcttcttgtttctcttcatgtatataaaatattcggtgctcacatgcatctg
tatattcggagcattgtttccccaatgctcgaaattttgagagtttacgagcaagaggga
tatgcaactttgaagccatggaataggataaacctcttaaatcgagatgaacaagatttt
aatccaaatttaaatgttgagtttagaagtcaagctgctgcacagacggattgtcttttg
agatataaggaatcttctgaattcgtagcatttgtagatctagatgatctaattattcct
cgtgtagctgacaattatgccagcgagtttcgatacctagcttctgaacacccaacagtt
gcatatttcacgtattcaaaagaaaatacaagaataaaagcatataaacgagcaaatgtt
ttttcgattgaacatgttcttcgaaatataaaacatgaacaacaaaccgaaactggaaaa
atgattgcaatcccctcaaaaatcaacaatacgtggattcattggccacagaaaaatctg
aaaaaattggccgtgaagcctgaattcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCACAATCTTCTTGTTTCTCTTC 29 547 508 Antisense
TATTCGGTGCTCACATGCATCTGTA 647 663 545 Antisense
ATATTCGGAGCATTGTTTCCCCAAT 14 17 569 Antisense
GTTTCCCCAATGCTCGAAATTTTGA 542 449 583 Antisense
GAAGTCAAGCTGCTGCACAGACGGA 115 337 713 Antisense
AATCTTCTGAATTCGTAGCATTTGT 195 171 758 Antisense
TAATTATTCCTCGTGTAGCTGACAA 656 633 797 Antisense
GCCAGCGAGTTTCGATACCTAGCTT 389 279 826 Antisense
ACCTAGCTTCTGAACACCCAACAGT 635 83 842 Antisense
ACCCAACAGTTGCATATTTCACGTA 31 91 857 Antisense
AATTGGCCGTGAAGCCTGAATTCAA 250 179 1052 Antisense
Sequence Source Affymetrix Proprietary Database