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[186758_at]

Description Y39A3CR.5 /REP_DB=WormBase Gene ID /WP=CE21654 /TR=Q9N409 /GB=AAF60524.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 22      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 279
1 2 3 4 range
A 334.7
(0.8)
P 		229.9
(-1.8)
A 		183.1
(-3)
A 		422.2
(3)
A 		239
B 446.8
(3)
P 		246.8
(-3)
A 		322.2
(-0.7)
M 		331.8
(-0.5)
P 		200
C 358
(1.4)
P 		245.2
(-1.2)
A 		167.6
(-3)
P 		428.2
(3)
P 		261
avr 379.8
(2.5) 		240.6
(-2.4) 		224.3
(-3) 		394.1
(3) 		170

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 224
1 2 3 4 5 6 range
A 287.7
(3)
A 		224.3
(0.8)
P 		176.6
(-0.8)
A 		115.5
(-2.8)
A 		131.6
(-2.3)
A 		110.9
(-3)
A 		177
B 259.1
(3)
A 		213.1
(0.2)
A 		217.9
(0.5)
A 		177.2
(-2)
A 		212.8
(0.2)
A 		161.6
(-3)
A 		98
C 129.7
(-2.7)
A 		334.8
(3)
A 		188
(-1)
A 		149.5
(-2.1)
A 		117
(-3)
A 		161
(-1.8)
A 		218
avr 225.5
(1.3) 		257.4
(3) 		194.2
(-0.4) 		147.4
(-2.8) 		153.8
(-2.5) 		144.5
(-3) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 121.9
(3)
P 		49.9
(-2.8)
A 		47.9
(-3)
A 		61.8
(-1.9)
A 		74
B 142.5
(3)
P 		61
(-3)
A 		74.7
(-2)
M 		70.7
(-2.3)
P 		82
C 118.5
(3)
P 		70.5
(-1.8)
A 		58.4
(-3)
P 		72.2
(-1.6)
P 		60
avr 127.6
(3) 		60.5
(-3) 		60.3
(-3) 		68.2
(-2.3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 53
(-0)
A 		79.8
(3)
P 		38.5
(-1.7)
A 		29.3
(-2.7)
A 		39.7
(-1.6)
A 		27
(-3)
A 		53
B 90.2
(3)
A 		70.9
(0.3)
A 		52.9
(-2.2)
A 		46.9
(-3)
A 		86.4
(2.5)
A 		60.2
(-1.2)
A 		43
C 48.1
(-1.5)
A 		102.2
(3)
A 		47.8
(-1.5)
A 		30.1
(-3)
A 		37.8
(-2.4)
A 		53.9
(-1)
A 		72
avr 63.8
(0.5) 		84.3
(3) 		46.4
(-1.7) 		35.4
(-3) 		54.6
(-0.6) 		47
(-1.6) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186758_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8123
Sequence Type Exemplar sequence
Representative Public ID Y39A3CR.5 NCBI
Target Description Y39A3CR.5 /REP_DB=WormBase Gene ID /WP=CE21654 /TR=Q9N409 /GB=AAF60524.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065065(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065065 NCBI Caenorhabditis elegans Y39A3CR.5 (Y39A3CR.5) mRNA, complete cds. 10/11 None
Y39A3CR.5 ENSEMBL cdna:known chromosome:CEL140:III:1858902:1859558:1 gene:Y39A3CR.5 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029612 4/11 Cross Hyb Matching Probes None
GENEFINDER00000029620 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1858881-1859558(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39A3CR.5
Entrez Gene 189727 Entrez gene
SwissProt Q9N409 EMBL-EBI
WormBase CE33944 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60524 Hypothetical protein Y39A3CR.5 [Caenorhabditis elegans] ref|NP_497466.2| Y39A3CR.5 [Caenorhabditis elegans] 2.0E-32
Sequence
Target Sequence 
>C. ELEGANS:186758_AT
tgcccgggttcaaattttcacaaatttattcaaaagttgggtcccgtcacgtggggtact
gtagcactggtttcagctgtgtcagtgacataatttcggagtttttccgaagctctaagc
gtgcgaaagttaaaaatgttaataaaattcttaacatccaaactagcactattccaactc
cgagaagcactttgagcccaactacagtaatccatccgtccacgtcactaattcaaccga
ttccgacacttggaatgaacccatttgacatgttatcacctggttatcaagatatttggc
tccgactacaaagtgagcgacttctgctggaaaaacgaatttcagcgaaagaaggggagc
tgaaaaacctgatgcaattcgttcaaaaccccccgtttttgaatttcccccaatatatgc
tcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCCGGGTTCAAATTTTCACAAAT 222 583 14 Antisense
GTCCCGTCACGTGGGGTACTGTAGC 235 475 54 Antisense
GTAGCACTGGTTTCAGCTGTGTCAG 465 457 74 Antisense
GGAGTTTTTCCGAAGCTCTAAGCGT 683 515 111 Antisense
TTAACATCCAAACTAGCACTATTCC 421 681 164 Antisense
GCACTATTCCAACTCCGAGAAGCAC 668 315 179 Antisense
AAGCACTTTGAGCCCAACTACAGTA 170 149 198 Antisense
GTCACTAATTCAACCGATTCCGACA 559 463 237 Antisense
GAACCCATTTGACATGTTATCACCT 148 345 270 Antisense
TCAAGATATTTGGCTCCGACTACAA 181 631 300 Antisense
TTGAATTTCCCCCAATATATGCTCC 328 703 412 Antisense
Sequence Source Affymetrix Proprietary Database