[Home] | [Total List]

[186757_s_at]

Description F42A8.1 /REP_DB=WormBase Gene ID /WP=CE01578 /TR=SW:Q09321 /GB=CAA87779.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 86      4grp_highest_8_8 > 60      4grp_high_8_8 > 25      6grp_highest_nonorm > 97      6grp_total > 88      4grp_total > 38      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1029
1 2 3 4 range
A 1590.5
(3)
P 		826.9
(-1.5)
P 		561.8
(-3)
P 		995.9
(-0.5)
P 		1029
B 1521.8
(3)
P 		822.5
(-1.5)
P 		594.8
(-3)
P 		1013.3
(-0.3)
P 		927
C 1590.5
(3)
P 		910.9
(-1.5)
P 		684.9
(-3)
P 		945.3
(-1.3)
P 		906
avr 1567.6
(3) 		853.4
(-1.5) 		613.8
(-3) 		984.8
(-0.7) 		954

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1079
1 2 3 4 5 6 range
A 504.3
(-3)
P 		988.8
(-0.2)
P 		869.4
(-0.9)
P 		926.3
(-0.6)
P 		1058
(0.2)
P 		1543.1
(3)
P 		1039
B 620.8
(-3)
P 		871.2
(-1.3)
P 		937.7
(-0.8)
P 		695.1
(-2.5)
P 		1188.5
(1)
P 		1482.2
(3)
P 		861
C 632.3
(-3)
P 		859.5
(-1.6)
P 		948.8
(-1)
P 		884.7
(-1.4)
P 		1137
(0.2)
P 		1583
(3)
P 		951
avr 585.8
(-3) 		906.5
(-1) 		918.6
(-0.9) 		835.4
(-1.4) 		1127.8
(0.4) 		1536.1
(3) 		950
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 441
1 2 3 4 range
A 579.1
(3)
P 		179.5
(-2.5)
P 		146.9
(-3)
P 		145.8
(-3)
P 		433
B 485.3
(3)
P 		203.1
(-1.9)
P 		137.8
(-3)
P 		215.9
(-1.7)
P 		348
C 526.5
(3)
P 		261.9
(-1.3)
P 		238.7
(-1.7)
P 		159.4
(-3)
P 		367
avr 530.3
(3) 		214.8
(-2.3) 		174.5
(-3) 		173.7
(-3) 		357

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 460
1 2 3 4 5 6 range
A 93
(-3)
P 		351.7
(2.5)
P 		189.3
(-1)
P 		234.9
(0)
P 		319.3
(1.8)
P 		375.7
(3)
P 		283
B 216
(-2.5)
P 		290
(-1.3)
P 		227.7
(-2.3)
P 		184.1
(-3)
P 		482.9
(1.9)
P 		552.7
(3)
P 		369
C 234.4
(-2)
P 		262.3
(-1.6)
P 		241.5
(-1.9)
P 		177.9
(-3)
P 		367.9
(0.2)
P 		529.9
(3)
P 		352
avr 181.1
(-3) 		301.3
(-0.6) 		219.5
(-2.2) 		199
(-2.6) 		390
(1.1) 		486.1
(3) 		305
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186757_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3462
Sequence Type Exemplar sequence
Representative Public ID F42A8.1 NCBI
Target Description F42A8.1 /REP_DB=WormBase Gene ID /WP=CE01578 /TR=SW:Q09321 /GB=CAA87779.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063590(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063590 NCBI Caenorhabditis elegans F42A8.1 (F42A8.1) mRNA, complete cds. 11/11 None
SNAP00000044377 ENSEMBL cdna:SNAP chromosome:CEL140:II:9341470:9343305:-1 11/11 None
GENEFINDER00000044384 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9341470:9346477:-1 11/11 None
F42A8.1 ENSEMBL cdna:known chromosome:CEL140:II:9341374:9346499:-1 gene:F42A8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9341466-9346474(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F42A8.1
Entrez Gene 174481 Entrez gene
SwissProt Q09321 EMBL-EBI
WormBase CE01578 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87779 Hypothetical protein F42A8.1 [Caenorhabditis elegans] ref|NP_495991.1| F42A8.1 [Caenorhabditis elegans] sp|Q09321|YR51_CAEEL Hypothetical protein F42A8.1 in chromosome II 0.0
blast CAE57844 Hypothetical protein CBG00873 [Caenorhabditis briggsae] 0.0
blast CAA87779 Hypothetical protein F42A8.1 [Caenorhabditis elegans] ref|NP_495991.1| F42A8.1 [Caenorhabditis elegans] sp|Q09321|YR51_CAEEL Hypothetical protein F42A8.1 in chromosome II 1.0E-118
blast CAE57844 Hypothetical protein CBG00873 [Caenorhabditis briggsae] 1.0E-107
blast CAA21540 Hypothetical protein Y37D8A.3 [Caenorhabditis elegans] ref|NP_499669.1| Y37D8A.3 [Caenorhabditis elegans] 2.0E-11
Sequence
Target Sequence 
>C. ELEGANS:186757_S_AT
gagggaactcgatacactgttggacaacaatacagagacggagactacctcttctattgc
aagttgcaaggtggaaagtgtacgaagcagtgcatcggatgtgttgctggtggacaagac
ttgtatgatggacaacggtacaaaagagatggaaccacttatcagtgcgagatccgtcca
ggaaaacgaagccaccgtgccgtcggatgctcgattgttgaaaatggtcgtgacattaac
aaggtgatcggatgtagatggtatgagcagaacccagactggaagatcgagaagacctgc
gaaactgacggagataacaagacaaaggtcaccacagttggatgcatctataaatacaag
ggattcgatcgaattttccttgagccaggaaagtacacaatttggaatcttccaaaacaa
aaggattcatcagttggacttgcttgccgaaagactgctgacggtgccgagttggtgatc
ttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGGAACTCGATACACTGTTGGAC 357 385 580 Antisense
GAGACTACCTCTTCTATTGCAAGTT 330 393 620 Antisense
GTGCATCGGATGTGTTGCTGGTGGA 344 481 669 Antisense
CACTTATCAGTGCGAGATCCGTCCA 644 195 735 Antisense
CCAGGAAAACGAAGCCACCGTGCCG 395 271 757 Antisense
TGCCGTCGGATGCTCGATTGTTGAA 132 585 777 Antisense
AGGTCACCACAGTTGGATGCATCTA 124 57 905 Antisense
GATTCGATCGAATTTTCCTTGAGCC 343 433 941 Antisense
GATTCATCAGTTGGACTTGCTTGCC 541 431 1003 Antisense
CTTGCTTGCCGAAAGACTGCTGACG 477 217 1018 Antisense
GACGGTGCCGAGTTGGTGATCTTCG 637 375 1039 Antisense
Sequence Source Affymetrix Proprietary Database