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[186755_s_at]

Description T19H5.4 /REP_DB=WormBase Gene ID /WP=CE01675 /TR=SW:Q09356 /GB=CAA87666.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      4grp_highest_8_8 > 52      4grp_high_8_8 > 17      6grp_highest_nonorm > 86      6grp_total > 93      4grp_total > 31      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2409
1 2 3 4 range
A 2823
(3)
P 		899.3
(-2.4)
P 		702.1
(-3)
P 		1923.9
(0.5)
P 		2121
B 3110.8
(3)
P 		1057.8
(-2.2)
P 		744.7
(-3)
P 		1860.8
(-0.2)
P 		2366
C 2916.7
(3)
P 		1142.1
(-1.8)
P 		713.3
(-3)
P 		1873.1
(0.2)
P 		2203
avr 2950.2
(3) 		1033.1
(-2.2) 		720
(-3) 		1885.9
(0.1) 		2230

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 693
1 2 3 4 5 6 range
A 935.3
(-1.4)
P 		1220.8
(1.4)
P 		767.2
(-3)
P 		986.2
(-0.9)
P 		1387.9
(3)
P 		1013.1
(-0.6)
P 		621
B 890.3
(-1.4)
P 		969.6
(-0.6)
P 		719
(-3)
P 		1059.4
(0.3)
P 		1344.7
(3)
P 		1143.3
(1.1)
P 		626
C 985.2
(0.2)
P 		1033.3
(0.8)
P 		1061.8
(1.1)
P 		694.5
(-3)
P 		1231.6
(3)
P 		1080
(1.3)
P 		537
avr 936.9
(-1.9) 		1074.6
(-0.1) 		849.3
(-3) 		913.4
(-2.2) 		1321.4
(3) 		1078.8
(-0.1) 		472
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 855
1 2 3 4 range
A 1027.8
(3)
P 		195.2
(-2.9)
P 		183.5
(-3)
P 		281.6
(-2.3)
P 		844
B 992
(3)
P 		261.3
(-2.4)
P 		172.6
(-3)
P 		396.5
(-1.4)
P 		819
C 965.5
(3)
P 		328.4
(-2.3)
P 		248.6
(-3)
P 		315.8
(-2.4)
P 		717
avr 995.1
(3) 		261.6
(-2.5) 		201.6
(-3) 		331.3
(-2) 		794

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 407
1 2 3 4 5 6 range
A 172.4
(-2.9)
P 		434.2
(3)
P 		167.1
(-3)
P 		250.1
(-1.1)
P 		418.8
(2.7)
P 		246.7
(-1.2)
P 		267
B 309.8
(-0.8)
P 		322.7
(-0.6)
P 		174.6
(-3)
P 		280.6
(-1.3)
P 		546.3
(3)
P 		426.3
(1.1)
P 		372
C 365.2
(2.2)
P 		315.3
(1.1)
P 		270.2
(0)
P 		139.7
(-3)
P 		398.5
(3)
P 		361.5
(2.1)
P 		259
avr 282.5
(-1.1) 		357.4
(0.7) 		204
(-3) 		223.5
(-2.5) 		454.5
(3) 		344.8
(0.4) 		251
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186755_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3490
Sequence Type Exemplar sequence
Representative Public ID T19H5.4 NCBI
Target Description T19H5.4 /REP_DB=WormBase Gene ID /WP=CE01675 /TR=SW:Q09356 /GB=CAA87666.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063635(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063635 NCBI Caenorhabditis elegans T19H5.4 (T19H5.4) mRNA, complete cds. 11/11 None
SNAP00000023257 ENSEMBL cdna:SNAP chromosome:CEL140:II:9486583:9487266:-1 9/11 None
GENEFINDER00000023259 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9486583:9487781:-1 11/11 None
T19H5.4 ENSEMBL cdna:known chromosome:CEL140:II:9486299:9488169:-1 gene:T19H5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9486579-9487778(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T19H5.4
Entrez Gene 174503 Entrez gene
SwissProt Q09356 EMBL-EBI
WormBase CE01675 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87666 Hypothetical protein T19H5.4 [Caenorhabditis elegans] ref|NP_496036.1| T19H5.4 [Caenorhabditis elegans] sp|Q09356|YRZ4_CAEEL Hypothetical protein T19H5.4 in chromosome II 1.0E-151
blast CAA87666 Hypothetical protein T19H5.4 [Caenorhabditis elegans] ref|NP_496036.1| T19H5.4 [Caenorhabditis elegans] sp|Q09356|YRZ4_CAEEL Hypothetical protein T19H5.4 in chromosome II 5.0E-84
blast CAE59370 Hypothetical protein CBG02720 [Caenorhabditis briggsae] 2.0E-78
blast CAE59370 Hypothetical protein CBG02720 [Caenorhabditis briggsae] 5.0E-78
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496036.1 1 57-79
T19H5.4 1 57-79
GENEFINDER00000023259 1 57-79
Sequence
Target Sequence 
>C. ELEGANS:186755_S_AT
gtgttcttccactacttgacagtatatatctatctgtatataagagtttaaatctttaca
cctttgcttactctacctttccaaaaatgatggaagttgcctcttcatcctctgcttgtc
aatttgacaaccttaacaacaacaacaatgagctcaagccagtccgtccaaaacgtgatt
tccgattcaaagtgattgaggtgcaaaacggaccaaaatggtttgtgtggccaagccgca
atcgtggaagttcggaagacgttgatgagaatgataacaagaaagtctcacagccacaaa
ataatggattcggagcactcagacgtagtgttatccgccagtcgaaaaggaaacaggatc
aagatgccatcgccgctcgcaccgcatctgaaccagcctcagctcgtcgtctatccgcaa
aaaaagagaaagcagtgacggaaccattaaatcaagtctcctcaatgttcaagatcatct
cgattgaaaagaattgggaaagcttcgacgctactgataatgaggataacgatgaggatc
tggaagacggagcccgcacagtttcagtcatttccttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTTCTTCCACTACTTGACAGTAT 440 483 329 Antisense
TTGCTTACTCTACCTTTCCAAAAAT 452 701 392 Antisense
TGATGGAAGTTGCCTCTTCATCCTC 179 567 416 Antisense
CTTCATCCTCTGCTTGTCAATTTGA 326 221 431 Antisense
AACAATGAGCTCAAGCCAGTCCGTC 219 135 472 Antisense
TGTGGCCAAGCCGCAATCGTGGAAG 394 555 554 Antisense
CAGACGTAGTGTTATCCGCCAGTCG 585 205 648 Antisense
ACAGGATCAAGATGCCATCGCCGCT 371 107 681 Antisense
GAACCATTAAATCAAGTCTCCTCAA 26 347 769 Antisense
ATCTGGAAGACGGAGCCCGCACAGT 382 33 866 Antisense
CGCACAGTTTCAGTCATTTCCTTGA 187 255 883 Antisense
Sequence Source Affymetrix Proprietary Database