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[186754_at]

Description Y32H12A.5 /REP_DB=WormBase Gene ID /WP=CE24200 /TR=Q9N536 /GB=AAF60489.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 38      6grp_total > 37      4grp_total > 13      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 225
1 2 3 4 range
A 264.9
(0.5)
P 		209.9
(-1)
A 		137.1
(-3)
A 		358.7
(3)
P 		222
B 271.8
(0.3)
P 		162.5
(-3)
A 		218
(-1.3)
P 		362
(3)
P 		200
C 277.6
(-0.6)
P 		221.4
(-3)
A 		236.1
(-2.4)
P 		361.5
(3)
P 		140
avr 271.4
(-0.3) 		197.9
(-3) 		197.1
(-3) 		360.7
(3) 		164

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 364
1 2 3 4 5 6 range
A 286.2
(-0.1)
P 		342.4
(1.4)
P 		174
(-3)
P 		229.2
(-1.6)
P 		197.3
(-2.4)
P 		405.1
(3)
P 		231
B 327.1
(3)
P 		271.8
(0.5)
P 		280.1
(0.9)
P 		204.5
(-2.4)
P 		191.8
(-3)
P 		268.4
(0.4)
P 		135
C 537.8
(3)
P 		283.8
(-1.7)
P 		262.8
(-2.1)
P 		215.1
(-3)
M 		249.3
(-2.4)
P 		297.7
(-1.5)
P 		323
avr 383.7
(3) 		299.3
(0) 		239
(-2.1) 		216.3
(-2.9) 		212.8
(-3) 		323.7
(0.9) 		171
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 96.5
(3)
P 		45.6
(-2)
A 		35.8
(-3)
A 		52.5
(-1.3)
P 		61
B 86.7
(3)
P 		40.1
(-3)
A 		50.5
(-1.7)
P 		77.1
(1.8)
P 		47
C 91.9
(3)
P 		63.6
(-2.5)
A 		82.3
(1.1)
P 		61
(-3)
P 		31
avr 91.7
(3) 		49.8
(-3) 		56.2
(-2.1) 		63.5
(-1) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 52.8
(-1.9)
P 		121.8
(3)
P 		37.9
(-3)
P 		58.1
(-1.6)
P 		59.5
(-1.5)
P 		98.6
(1.3)
P 		84
B 113.8
(3)
P 		90.5
(0.7)
P 		68
(-1.6)
P 		54.2
(-3)
P 		77.9
(-0.6)
P 		100.1
(1.6)
P 		60
C 199.3
(3)
P 		86.6
(-1.3)
P 		66.9
(-2.1)
P 		43.3
(-3)
M 		80.7
(-1.6)
P 		99.6
(-0.8)
P 		156
avr 122
(3) 		99.6
(1.1) 		57.6
(-2.5) 		51.9
(-3) 		72.7
(-1.2) 		99.4
(1.1) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186754_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7957
Sequence Type Exemplar sequence
Representative Public ID Y32H12A.5 NCBI
Target Description Y32H12A.5 /REP_DB=WormBase Gene ID /WP=CE24200 /TR=Q9N536 /GB=AAF60489.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065747(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065747 NCBI Caenorhabditis elegans Y32H12A.5 (Y32H12A.5) mRNA, complete cds. 10/11 None
GENEFINDER00000037248 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5375932:5379875:-1 11/11 None
SNAP00000037244 ENSEMBL cdna:SNAP chromosome:CEL140:III:5376170:5379875:-1 9/11 None
Y32H12A.5.1 ENSEMBL cdna:known chromosome:CEL140:III:5375658:5379886:-1 gene:Y32H12A.5 10/11 None
Y32H12A.5.2 ENSEMBL cdna:known chromosome:CEL140:III:5375663:5379885:-1 gene:Y32H12A.5 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5375930-5379874(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y32H12A.5
Entrez Gene 175739 Entrez gene
SwissProt Q9N536 EMBL-EBI
WormBase CE35070 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:246097_AT expressed protein at
CANINE_2:CFA.1030.1.S1_AT similar to adiponectin receptor 2 cfa
CANINE_2:CFA.10882.1.A1_AT similar to adiponectin receptor 2 cfa
CANINE_2:CFAAFFX.24419.1.S1_AT similar to adiponectin receptor 2 cfa
CANINE_2:CFAAFFX.24419.1.S1_S_AT similar to adiponectin receptor 2 cfa
CHICKEN:GGA.4464.1.S1_A_AT adiponectin receptor 2 gga
CHICKEN:GGA.8371.1.S1_S_AT adiponectin receptor 2 gga
HG-U133_PLUS_2:201346_AT adiponectin receptor 2 hs
HG-U133A:201346_AT adiponectin receptor 2 hs
HG-U133A_2:201346_AT adiponectin receptor 2 hs
HU35KSUBA:RC_AA045263_AT adiponectin receptor 2 hs
U133_X3P:G13375714_3P_AT adiponectin receptor 2 hs
HG-U95AV2:39045_AT adiponectin receptor 2 hs
HG-U95E:82083_AT adiponectin receptor 2 hs
HU35KSUBC:RC_T99544_F_AT Adiponectin receptor 2 hs
HG-U95D:85253_AT Adiponectin receptor 2 hs
HU35KSUBC:RC_D45719_AT Adiponectin receptor 2 hs
MU11KSUBA:AA208776_S_AT adiponectin receptor 2 mm
MG-U74AV2:104605_AT adiponectin receptor 2 mm
MG-U74BV2:106935_AT adiponectin receptor 2 mm
MG-U74CV2:169881_R_AT adiponectin receptor 2 mm
MOE430A:1434329_S_AT adiponectin receptor 2 mm
MOUSE430A_2:1434329_S_AT adiponectin receptor 2 mm
MOUSE430_2:1434329_S_AT adiponectin receptor 2 mm
MOE430B:1437864_AT adiponectin receptor 2 mm
MOUSE430_2:1437864_AT adiponectin receptor 2 mm
MU19KSUBA:TC24412_AT Adiponectin receptor 2, mRNA (cDNA clone MGC:37947 IMAGE:5132696) mm
MU19KSUBB:TC31523_AT Adiponectin receptor 2, mRNA (cDNA clone MGC:37947 IMAGE:5132696) mm
MU19KSUBB:TC32459_AT Adiponectin receptor 2, mRNA (cDNA clone MGC:37947 IMAGE:5132696) mm
MU19KSUBB:TC32459_G_AT Adiponectin receptor 2, mRNA (cDNA clone MGC:37947 IMAGE:5132696) mm
MU19KSUBC:TC37444_AT Adiponectin receptor 2, mRNA (cDNA clone MGC:37947 IMAGE:5132696) mm
RG-U34A:RC_AA858588_AT adiponectin receptor 2 (predicted) rn
RG-U34A:RC_AA859796_AT adiponectin receptor 2 (predicted) rn
RG-U34C:RC_AI237718_AT adiponectin receptor 2 (predicted) rn
RAE230A:1390549_AT adiponectin receptor 2 (predicted) rn
RAT230_2:1390549_AT adiponectin receptor 2 (predicted) rn
RAE230B:1395146_AT adiponectin receptor 2 (predicted) rn
RAT230_2:1395146_AT adiponectin receptor 2 (predicted) rn
RAE230B:1397519_AT adiponectin receptor 2 (predicted) rn
RAT230_2:1397519_AT adiponectin receptor 2 (predicted) rn
RAE230A:1371598_AT Adiponectin receptor 2 (predicted) rn
RAT230_2:1371598_AT Adiponectin receptor 2 (predicted) rn
RG-U34A:RC_AA858588_G_AT Adiponectin receptor 2 (predicted) rn
RG-U34C:RC_AI169279_AT Adiponectin receptor 2 (predicted) rn
YEAST_2:1773519_AT Membrane protein involved in zinc metabolism, member of the four-protein IZH family, direct target of the Zap1p transcription factor, expression induced by zinc deficiency and fatty acids, deletion increases sensitivity to elevated zinc Sc
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60489 Hypothetical protein Y32H12A.5 [Caenorhabditis elegans] ref|NP_498148.2| Y32H12A.5 [Caenorhabditis elegans] 0.0
blast CAE61329 Hypothetical protein CBG05167 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004254 EMBL-EBI Hly-III related proteins 4.9E-103
Pfam IPR004254 EMBL-EBI Hly-III related proteins 4.9E-103
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498148.2 7 314-333,346-368,383-403,410-429,439-461,474-492,507-529
Y32H12A.5.1 7 314-333,346-368,383-403,410-429,439-461,474-492,507-529
Y32H12A.5.2 7 314-333,346-368,383-403,410-429,439-461,474-492,507-529
GENEFINDER00000037248 7 357-376,389-411,426-446,453-472,482-504,517-535,550-572
SNAP00000037244 7 314-333,346-368,383-403,410-429,439-461,474-492,507-529
Sequence
Target Sequence 
>C. ELEGANS:186754_AT
agcaatgggcctatcggctgtggtcccagcatttcatttacttgtagttgacggtgttca
ttatatggttgaggagtcacaagttcatttgatgattatgatgggagccatgtatattgg
tggtgcaacactctatgcgacacgtgtacctgagagatgtttccctggaaagtgcgatat
ttggttccaatcgcatcaactctttcacacatttgtcgtgctcgccgcttttgttcatta
tcacgcgatctcccaaatgggaatgcataagctcatgaaaggatcctgcccggatcaact
gaaaactcgttacggtaacgagttgaatccttccttcgttggcactttgcttgggctcga
cgagccactcaatgtcagagactggacaccggcggataaacctctgcacaatatgtatag
ttgcgtatatatgctcttcttgaagctgctacaaccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAATGGGCCTATCGGCTGTGGTC 593 75 1350 Antisense
GGTCCCAGCATTTCATTTACTTGTA 134 503 1371 Antisense
GGTGGTGCAACACTCTATGCGACAC 79 499 1468 Antisense
GTACCTGAGAGATGTTTCCCTGGAA 697 457 1495 Antisense
ATTTGGTTCCAATCGCATCAACTCT 252 19 1528 Antisense
GCATCAACTCTTTCACACATTTGTC 281 309 1542 Antisense
TCATTATCACGCGATCTCCCAAATG 650 619 1584 Antisense
ACGAGTTGAATCCTTCCTTCGTTGG 637 91 1667 Antisense
CTCGACGAGCCACTCAATGTCAGAG 400 233 1705 Antisense
TGGACACCGGCGGATAAACCTCTGC 206 547 1732 Antisense
GCTCTTCTTGAAGCTGCTACAACCC 278 301 1782 Antisense
Sequence Source Affymetrix Proprietary Database