[Home] | [Total List]

[186753_at]

Description Y71F9AL.9 /REP_DB=WormBase Gene ID /WP=CE22858 /TR=Q9N4I3 /GB=AAF35998.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 08      4grp_highest_8_8 > 01      4grp_high_8_8 > 53      6grp_highest_nonorm > 01      6grp_total > 19      4grp_total > 51      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 930
1 2 3 4 range
A 2163.7
(-2)
P 		2730
(3)
P 		2495.1
(0.9)
P 		2056.2
(-3)
P 		674
B 2212.6
(-0.1)
P 		2421.9
(2.6)
P 		2451.3
(3)
P 		1987.6
(-3)
P 		464
C 2203.5
(-0.4)
P 		2736.8
(3)
P 		2417.7
(0.9)
P 		1806.9
(-3)
P 		930
avr 2193.3
(-0.9) 		2629.6
(3) 		2454.7
(1.5) 		1950.2
(-3) 		679

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1854
1 2 3 4 5 6 range
A 2636.3
(3)
P 		2064.2
(0.6)
P 		1231.6
(-3)
P 		2036.1
(0.4)
P 		1820.5
(-0.5)
P 		1925.9
(-0)
P 		1405
B 1903.7
(2.8)
P 		1640.1
(0.3)
P 		1466.4
(-1.4)
P 		1817.1
(2)
P 		1923.7
(3)
P 		1295.6
(-3)
P 		628
C 3012.1
(3)
P 		1717.7
(-1.2)
P 		2261.2
(0.6)
P 		1700.1
(-1.2)
P 		2159.7
(0.2)
P 		1157.9
(-3)
P 		1854
avr 2517.4
(3) 		1807.3
(-1) 		1653.1
(-1.9) 		1851.1
(-0.8) 		1968
(-0.1) 		1459.8
(-3) 		1058
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 542
1 2 3 4 range
A 787.8
(3)
P 		592.6
(0.6)
P 		652.3
(1.3)
P 		301
(-3)
P 		487
B 705.6
(3)
P 		598.1
(0.7)
P 		568
(0.1)
P 		423.6
(-3)
P 		282
C 729.4
(1.7)
P 		786.8
(2.4)
P 		842.6
(3)
P 		304.7
(-3)
P 		538
avr 740.9
(3) 		659.2
(1.8) 		687.6
(2.2) 		343.1
(-3) 		398

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 848
1 2 3 4 5 6 range
A 486
(-0.2)
P 		734.1
(3)
P 		268.2
(-3)
P 		516.4
(0.2)
P 		549.3
(0.6)
P 		468.9
(-0.4)
P 		466
B 662.4
(1.3)
P 		545.9
(-0.3)
P 		356.1
(-3)
P 		481.3
(-1.2)
P 		781.6
(3)
P 		483.1
(-1.2)
P 		426
C 1116.4
(3)
P 		524.1
(-1.6)
P 		575.5
(-1.2)
P 		341.9
(-3)
P 		698.8
(-0.2)
P 		387.6
(-2.6)
P 		775
avr 754.9
(3) 		601.4
(0.4) 		399.9
(-3) 		446.5
(-2.2) 		676.6
(1.7) 		446.5
(-2.2) 		355
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186753_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.64
Sequence Type Exemplar sequence
Representative Public ID Y71F9AL.9 NCBI
Target Description Y71F9AL.9 /REP_DB=WormBase Gene ID /WP=CE22858 /TR=Q9N4I3 /GB=AAF35998.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058662(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058662 NCBI Caenorhabditis elegans Y71F9AL.9 (Y71F9AL.9) mRNA, complete cds. 11/11 None
SNAP00000005886 ENSEMBL cdna:SNAP chromosome:CEL140:I:2876937:2878038:1 11/11 None
GENEFINDER00000005897 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2876937:2878038:1 11/11 None
Y71F9AL.9.1 ENSEMBL cdna:known chromosome:CEL140:I:2876931:2878514:1 gene:Y71F9AL.9 11/11 None
Y71F9AL.9.2 ENSEMBL cdna:known chromosome:CEL140:I:2876933:2878514:1 gene:Y71F9AL.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2876936-2878038(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71F9AL.9
Entrez Gene 171854 Entrez gene
SwissProt Q9N4I3 EMBL-EBI
WormBase CE22858 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF35998 Hypothetical protein Y71F9AL.9 [Caenorhabditis elegans] ref|NP_491063.1| Y71F9AL.9 [Caenorhabditis elegans] 1.0E-121
blast CAE60591 Hypothetical protein CBG04227 [Caenorhabditis briggsae] 6.0E-95
Sequence
Target Sequence 
>C. ELEGANS:186753_AT
ccagcctcttcttcggtaactaaatcagctgctgcacctaaaccagttgtcagtgcacca
gctccagctgatccgttgtcgacagctttcaaggctatccgactcgcattgaacgaccgc
gagaaggagttgaagcagtcaaacgcttcacaatttgatacctctacaattctcaaagca
attgctgctcttggaggatcttcaaagccggttgccaacggaaagccagcagcagctcca
acgaagcaggcggtttctccacctccagccgctgggccaatcaagcacgctactagtcag
tcaagcatcacttcatccgtcggagcagattcaggtgttaacctcagcccaacacacaaa
gaagataagaaagccgcatcaaagacagtcaccaacacggctggcttccaactcacttca
tcgggactcagcgccgatcagttggctgatcttcagaagacactcatgctcacaatggca
tctcgtggcgtcgacgcttccctgatcacctcttcggaaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAGCCTCTTCTTCGGTAACTAAAT 246 273 331 Antisense
TAAACCAGTTGTCAGTGCACCAGCT 226 639 369 Antisense
GACAGCTTTCAAGGCTATCCGACTC 151 369 411 Antisense
ATCCGACTCGCATTGAACGACCGCG 600 37 427 Antisense
TGGAGGATCTTCAAAGCCGGTTGCC 193 549 522 Antisense
GCCGGTTGCCAACGGAAAGCCAGCA 72 283 537 Antisense
TCCAACGAAGCAGGCGGTTTCTCCA 561 587 567 Antisense
GCATCACTTCATCCGTCGGAGCAGA 199 301 635 Antisense
GATTCAGGTGTTAACCTCAGCCCAA 260 431 658 Antisense
GCTCACAATGGCATCTCGTGGCGTC 333 301 798 Antisense
TTCCCTGATCACCTCTTCGGAAAAC 545 695 828 Antisense
Sequence Source Affymetrix Proprietary Database