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[186751_at]

Description Y71F9AL.6 /REP_DB=WormBase Gene ID /WP=CE22840 /TR=Q9N4H8 /GB=AAF36000.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 45      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 34.9
(-0.2)
A 		40.8
(3)
A 		33.1
(-1.2)
A 		29.9
(-3)
A 		11
B 45.8
(3)
A 		42.3
(2.5)
A 		4.5
(-3)
A 		6.9
(-2.7)
A 		41
C 36.3
(3)
A 		8.8
(-3)
A 		14.9
(-1.7)
A 		26.2
(0.8)
A 		28
avr 39
(3) 		30.6
(0.7) 		17.5
(-3) 		21
(-2) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 40.5
(3)
A 		7
(-2.7)
A 		11.2
(-2)
A 		5.3
(-3)
A 		20.1
(-0.5)
A 		31.2
(1.4)
A 		35
B 31.1
(1.2)
A 		38
(3)
A 		15.3
(-2.8)
A 		31.7
(1.4)
A 		14.5
(-3)
A 		34.9
(2.2)
A 		24
C 7.9
(-3)
A 		19.2
(-1.2)
A 		30.7
(0.6)
A 		45.1
(3)
A 		13.6
(-2.1)
A 		45.4
(3)
A 		38
avr 26.5
(-0) 		21.4
(-1.5) 		19.1
(-2.1) 		27.4
(0.2) 		16.1
(-3) 		37.2
(3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 12.7
(3)
A 		8.9
(0.3)
A 		8.6
(0)
A 		4.4
(-3)
A 		8
B 14.6
(3)
A 		10.4
(1.1)
A 		1
(-3)
A 		1.5
(-2.8)
A 		14
C 12
(3)
A 		2.5
(-3)
A 		5.2
(-1.3)
A 		4.4
(-1.8)
A 		10
avr 13.1
(3) 		7.3
(-0.6) 		4.9
(-2.1) 		3.4
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 7.5
(2.9)
A 		2.5
(-1.9)
A 		2.4
(-2)
A 		1.3
(-3)
A 		6.1
(1.6)
A 		7.6
(3)
A 		6
B 10.8
(1.6)
A 		12.6
(2.7)
A 		3.7
(-3)
A 		8.4
(0)
A 		5.9
(-1.6)
A 		13
(3)
A 		9
C 2.9
(-3)
A 		5.9
(-1.5)
A 		7.8
(-0.6)
A 		9.1
(0)
A 		4.4
(-2.3)
A 		15.2
(3)
A 		12
avr 7.1
(-0.9) 		7
(-1) 		4.6
(-3) 		6.3
(-1.6) 		5.5
(-2.3) 		11.9
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186751_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.43
Sequence Type Exemplar sequence
Representative Public ID Y71F9AL.6 NCBI
Target Description Y71F9AL.6 /REP_DB=WormBase Gene ID /WP=CE22840 /TR=Q9N4H8 /GB=AAF36000.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058667(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058667 NCBI Caenorhabditis elegans Y71F9AL.6 (Y71F9AL.6) mRNA, complete cds. 11/11 None
GENEFINDER00000005910 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2887801:2892943:1 11/11 None
Y71F9AL.6 ENSEMBL cdna:known chromosome:CEL140:I:2890447:2891262:1 gene:Y71F9AL.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005893 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2890446-2891262(+) 80.76 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71F9AL.6
Entrez Gene 171859 Entrez gene
SwissProt Q9N4H8 EMBL-EBI
WormBase CE22840 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF35999 Hypothetical protein Y71F9AL.7 [Caenorhabditis elegans] ref|NP_491067.1| Y71F9AL.7 [Caenorhabditis elegans] 1.0E-126
blast AAF36000 Hypothetical protein Y71F9AL.6 [Caenorhabditis elegans] ref|NP_491068.1| Y71F9AL.6 [Caenorhabditis elegans] 9.0E-91
blast AAF36000 Hypothetical protein Y71F9AL.6 [Caenorhabditis elegans] ref|NP_491068.1| Y71F9AL.6 [Caenorhabditis elegans] 2.0E-81
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491068.1 3 24-46,66-88,247-269
Y71F9AL.6 3 24-46,66-88,247-269
GENEFINDER00000005910 2 238-260,280-302
Sequence
Target Sequence 
>C. ELEGANS:186751_AT
ttggcgtttttcttgcgtgttatgcaattgctagcagagacggcagatggtacacaggta
cctcgaaaacattatcgatcgtcgtcggtacaccagaatccacgtcatctctccctgtcc
ctctcagtctcccacactctctactcgacatggcaatttctgcgtacatcccgaaaatcg
acgaagaagcactcagaaccgctttccacgctgaagccgaagatcatgagcagctagaaa
atgcgaaccgccgacaagccgaaaaggagagattccgccaaatttggcatctatttctga
cgcatttggagcaagatccacggaaaactggaagtttctggctgcaagagctgcctgtgt
tgctccgcgaggtttcgagtttcgatgaggatattttgggattcggagcgcttgatggtg
agga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGCGTTTTTCTTGCGTGTTATGC 500 707 248 Antisense
GAGACGGCAGATGGTACACAGGTAC 528 393 284 Antisense
GATCGTCGTCGGTACACCAGAATCC 143 417 324 Antisense
CACTCTCTACTCGACATGGCAATTT 560 197 382 Antisense
CATGGCAATTTCTGCGTACATCCCG 706 209 396 Antisense
CGCTTTCCACGCTGAAGCCGAAGAT 387 253 447 Antisense
GAACCGCCGACAAGCCGAAAAGGAG 195 345 492 Antisense
ATTTGGCATCTATTTCTGACGCATT 467 17 529 Antisense
GTTTCTGGCTGCAAGAGCTGCCTGT 366 451 581 Antisense
TGCTCCGCGAGGTTTCGAGTTTCGA 499 581 608 Antisense
GATTCGGAGCGCTTGATGGTGAGGA 584 431 647 Antisense
Sequence Source Affymetrix Proprietary Database