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[186750_at]

Description C48B4.9 /REP_DB=WormBase Gene ID /WP=CE00485 /TR=SW:P34363 /GB=CAA82381.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 88      6grp_total > 97      4grp_total > 19      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 55.2
(-3)
A 		81.7
(-1.8)
M 		67.6
(-2.4)
A 		188.2
(3)
P 		133
B 102.1
(1)
P 		111.7
(2.1)
A 		118.7
(3)
A 		70.1
(-3)
P 		49
C 83.8
(-0.2)
A 		97.9
(0.6)
A 		35.1
(-3)
A 		140.7
(3)
P 		106
avr 80.4
(-2.3) 		97.1
(-0.6) 		73.8
(-3) 		133
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 454
1 2 3 4 5 6 range
A 39.4
(-3)
A 		42.4
(-3)
A 		60.1
(-2.7)
P 		183.1
(-1)
P 		332.3
(1.1)
P 		469.2
(3)
P 		430
B 90
(-2.6)
A 		60.3
(-3)
A 		68.7
(-2.9)
A 		133.6
(-2)
P 		332.1
(0.8)
P 		493
(3)
P 		433
C 73.3
(-2.8)
P 		57.1
(-3)
P 		56
(-3)
A 		137.6
(-1.8)
P 		275.4
(0.1)
P 		475.6
(3)
P 		420
avr 67.6
(-2.8) 		53.3
(-3) 		61.6
(-2.9) 		151.4
(-1.6) 		313.3
(0.7) 		479.3
(3) 		426
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 20.1
(-1.5)
A 		17.7
(-3)
M 		17.7
(-3)
A 		27.5
(3)
P 		10
B 32.6
(3)
P 		27.6
(1.3)
A 		27.5
(1.3)
A 		14.9
(-3)
P 		18
C 27.7
(2.8)
A 		28.1
(3)
A 		12.2
(-3)
A 		23.7
(1.3)
P 		16
avr 26.8
(3) 		24.5
(1.2) 		19.1
(-3) 		22
(-0.7) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 177
1 2 3 4 5 6 range
A 7.3
(-3)
A 		15.1
(-2.6)
A 		13.1
(-2.7)
P 		46.4
(-0.8)
P 		100.3
(2.2)
P 		114.2
(3)
P 		107
B 31.3
(-2.5)
A 		20.1
(-2.9)
A 		16.7
(-3)
A 		35.4
(-2.3)
P 		134.9
(1.2)
P 		183.8
(3)
P 		167
C 27.2
(-2.5)
P 		17.4
(-2.9)
P 		14.3
(-3)
A 		27.7
(-2.4)
P 		89.1
(0.1)
P 		159.2
(3)
P 		145
avr 21.9
(-2.7) 		17.5
(-2.9) 		14.7
(-3) 		36.5
(-2.1) 		108.1
(1.1) 		152.4
(3) 		138
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186750_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7626
Sequence Type Exemplar sequence
Representative Public ID C48B4.9 NCBI
Target Description C48B4.9 /REP_DB=WormBase Gene ID /WP=CE00485 /TR=SW:P34363 /GB=CAA82381.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066711(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066711 NCBI Caenorhabditis elegans C48B4.9 (C48B4.9) mRNA, complete cds. 11/11 None
SNAP00000040761 ENSEMBL cdna:SNAP chromosome:CEL140:III:9562432:9563216:-1 11/11 None
GENEFINDER00000040780 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9562432:9563216:-1 11/11 None
C48B4.9 ENSEMBL cdna:known chromosome:CEL140:III:9562432:9563216:-1 gene:C48B4.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9562427-9563212(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C48B4.9
Entrez Gene 183567 Entrez gene
SwissProt P34363 EMBL-EBI
WormBase CE00485 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82381 Hypothetical protein C48B4.9 [Caenorhabditis elegans] ref|NP_499112.1| C48B4.9 [Caenorhabditis elegans] sp|P34363|YLH9_CAEEL Hypothetical protein C48B4.9 in chromosome III 1.0E-86
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499112.1 4 13-35,50-70,77-99,123-145
C48B4.9 4 13-35,50-70,77-99,123-145
SNAP00000040761 4 13-35,50-70,77-99,123-145
GENEFINDER00000040780 4 13-35,50-70,77-99,123-145
Sequence
Target Sequence 
>C. ELEGANS:186750_AT
aaaacaaggaccatcgctcctctatgtcattcccatcaagccagttgtgcttgcagttca
gcttggagcaattctctttcaattcaaatcgatatacgatttcgagtacaattttgtcgg
cgatctggtgtttcgtactttcgtgatcttcctctctctgacctccttcacagccttcct
cttcaatcaaaagattttgatgaaagctcatctggtgatggcgatattcttgctggctgg
ccccatcgcatgtcttcaatatcttgtttttgacttttatcgcgccgaatttcacggaga
caataatctcaaatgggaccacacgtcgtctttcgaaaactatttaatcttcattctggt
cattctactagctgtagcacttggcagctacacctggttgtgccacctgctaattgaggg
tctcgacgagaaaaatgctcccaaaagaagaccacaatgcaaaatttgctccaatcatta
tgttgtccccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACAAGGACCATCGCTCCTCTAT 179 131 39 Antisense
GCCAGTTGTGCTTGCAGTTCAGCTT 254 281 78 Antisense
TTGTCGGCGATCTGGTGTTTCGTAC 482 683 152 Antisense
TGTTTCGTACTTTCGTGATCTTCCT 298 561 167 Antisense
GTGATGGCGATATTCTTGCTGGCTG 62 485 253 Antisense
TTGTTTTTGACTTTTATCGCGCCGA 537 705 302 Antisense
CAAATGGGACCACACGTCGTCTTTC 205 193 348 Antisense
CATTCTGGTCATTCTACTAGCTGTA 161 217 390 Antisense
TGGCAGCTACACCTGGTTGTGCCAC 209 545 420 Antisense
GTGCCACCTGCTAATTGAGGGTCTC 143 479 438 Antisense
GCTCCAATCATTATGTTGTCCCCGA 46 299 506 Antisense
Sequence Source Affymetrix Proprietary Database