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[186748_at]

Description ZK512.1 /REP_DB=WormBase Gene ID /WP=CE00407 /TR=SW:P34639 /GB=CAA80144.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 36      4grp_total > 51      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 114.7
(0.7)
A 		143.5
(3)
A 		131.3
(2)
A 		67.3
(-3)
A 		76
B 128
(-0)
A 		178.2
(3)
A 		98.4
(-1.8)
A 		78.8
(-3)
A 		99
C 125.8
(0.2)
A 		162.4
(2.9)
M 		163.1
(3)
P 		82.9
(-3)
A 		80
avr 122.8
(0.3) 		161.4
(3) 		130.9
(0.8) 		76.3
(-3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 162
(1.4)
A 		184.4
(3)
P 		132.5
(-0.7)
A 		139.9
(-0.2)
P 		100.6
(-3)
A 		133
(-0.7)
A 		84
B 208.8
(3)
P 		178.2
(1.2)
P 		135.4
(-1.4)
P 		159.7
(0.1)
A 		108.9
(-3)
A 		143.5
(-0.9)
P 		100
C 154.3
(0.5)
P 		173.8
(1.4)
P 		123.4
(-0.8)
A 		211.7
(3)
P 		72.9
(-3)
A 		181.5
(1.7)
P 		139
avr 175
(2.7) 		178.8
(3) 		130.4
(-0.4) 		170.4
(2.4) 		94.1
(-3) 		152.7
(1.2) 		85
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 41.8
(3)
A 		31.2
(1)
A 		34.3
(1.6)
A 		9.8
(-3)
A 		32
B 40.8
(2.3)
A 		44
(3)
A 		22.8
(-1.7)
A 		16.8
(-3)
A 		27
C 41.6
(0.9)
A 		46.7
(1.6)
M 		56.8
(3)
P 		14
(-3)
A 		43
avr 41.4
(3) 		40.6
(2.8) 		38
(2.3) 		13.5
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 29.9
(-2.8)
A 		65.6
(3)
P 		28.9
(-3)
A 		35.5
(-1.9)
P 		30.4
(-2.8)
A 		32.4
(-2.4)
A 		37
B 72.7
(3)
P 		59.3
(1)
P 		32.9
(-3)
P 		42.3
(-1.6)
A 		44.3
(-1.3)
A 		53.5
(0.1)
P 		40
C 57.2
(2.4)
P 		53
(1.7)
P 		31.4
(-1.7)
A 		42.6
(0.1)
P 		23.6
(-3)
A 		60.8
(3)
P 		37
avr 53.3
(1.7) 		59.3
(3) 		31.1
(-3) 		40.1
(-1.1) 		32.8
(-2.6) 		48.9
(0.8) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186748_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7204
Sequence Type Exemplar sequence
Representative Public ID ZK512.1 NCBI
Target Description ZK512.1 /REP_DB=WormBase Gene ID /WP=CE00407 /TR=SW:P34639 /GB=CAA80144.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066618(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066618 NCBI Caenorhabditis elegans ZK512.1 (ZK512.1) mRNA, complete cds. 11/11 None
GENEFINDER00000002547 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9114492:9117093:1 11/11 None
ZK512.1 ENSEMBL cdna:known chromosome:CEL140:III:9114492:9117093:1 gene:ZK512.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002528 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9114487-9117089(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK512.1
Entrez Gene 191340 Entrez gene
SwissProt P34639 EMBL-EBI
WormBase CE00407 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA80144 Hypothetical protein ZK512.1 [Caenorhabditis elegans] ref|NP_499019.1| ZK512.1 [Caenorhabditis elegans] sp|P34639|YOQ1_CAEEL Hypothetical protein ZK512.1 in chromosome III 0.0
blast CAA80144 Hypothetical protein ZK512.1 [Caenorhabditis elegans] ref|NP_499019.1| ZK512.1 [Caenorhabditis elegans] sp|P34639|YOQ1_CAEEL Hypothetical protein ZK512.1 in chromosome III 1.0E-170
blast CAE62768 Hypothetical protein CBG06937 [Caenorhabditis briggsae] 1.0E-107
blast CAE62768 Hypothetical protein CBG06937 [Caenorhabditis briggsae] 1.0E-104
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499019.1 1 308-330
ZK512.1 1 308-330
GENEFINDER00000002547 1 279-301
Sequence
Target Sequence 
>C. ELEGANS:186748_AT
tgtggtgagttcgattcctcgttcactggtcgatatcactggagattcaacggatcctcg
attttgccggaaagaactcaaattcatagaaatcagtttgtgtttctggccggtgcaaat
gcgatacgaaatcagttacccggagaatatgaatgttgtgttcgagagacacttggaaat
gcttgttattcaagaatgattgtagttcaaaatcgcactgacaatcataacattgacatg
acaaactctacacttcttcttgctgatgaaggaaacacttactatatcagaatgcacgac
gtgaagagggtagaaggggtgaagtgcacacttgatggtgtgaatgttgacaatttcaag
tacccgttcctcggccgtcaaacaaagaaaactgtcccatatcacctaaaaatagagaat
attgagcgaggaggagaagtcaattgcgatctacgtcttcataaaaaagaaatagttcaa
aaaacttttgacattcgacttttgagaggattcatttcctcttcacaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGGTGAGTTCGATTCCTCGTTCA 30 555 424 Antisense
GATTCCTCGTTCACTGGTCGATATC 405 433 436 Antisense
GATTCAACGGATCCTCGATTTTGCC 396 429 467 Antisense
TTTGTGTTTCTGGCCGGTGCAAATG 276 659 520 Antisense
GATACGAAATCAGTTACCCGGAGAA 77 421 546 Antisense
GACATGACAAACTCTACACTTCTTC 391 369 658 Antisense
CTCTACACTTCTTCTTGCTGATGAA 690 229 669 Antisense
TGACAATTTCAAGTACCCGTTCCTC 311 571 771 Antisense
GAAAACTGTCCCATATCACCTAAAA 117 355 810 Antisense
AGTCAATTGCGATCTACGTCTTCAT 667 61 861 Antisense
GAGGATTCATTTCCTCTTCACAACT 204 403 929 Antisense
Sequence Source Affymetrix Proprietary Database