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[186747_at]

Description Y110A7A.2 /REP_DB=WormBase Gene ID /WP=CE24122 /TR=Q9N586 /GB=AAF60420.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 359
1 2 3 4 range
A 43.4
(-2.7)
A 		24.4
(-3)
A 		44
(-2.7)
A 		374.5
(3)
P 		350
B 55
(-2.1)
P 		15.4
(-3)
A 		52.8
(-2.1)
A 		276.4
(3)
P 		261
C 46.2
(-2.9)
A 		39.5
(-3)
A 		46.7
(-2.8)
A 		317.3
(3)
P 		278
avr 48.2
(-2.6) 		26.4
(-3) 		47.8
(-2.6) 		322.7
(3) 		296

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 74.6
(3)
A 		67.7
(1.7)
A 		59.6
(0.3)
A 		58.1
(-0)
A 		69.4
(2.1)
A 		41.7
(-3)
A 		33
B 34.7
(-3)
A 		38.6
(-2.5)
A 		81.2
(3)
M 		48.9
(-1.2)
A 		66.5
(1.1)
P 		54.7
(-0.4)
P 		47
C 42.6
(-0.1)
A 		58.6
(2)
A 		20
(-3)
A 		66.2
(3)
A 		42.1
(-0.1)
A 		33.3
(-1.3)
A 		46
avr 50.6
(-0.2) 		55
(1.4) 		53.6
(0.9) 		57.7
(2.4) 		59.3
(3) 		43.2
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 15.8
(-1.7)
A 		5.3
(-3)
A 		11.5
(-2.2)
A 		54.8
(3)
P 		50
B 17.5
(-1.5)
P 		3.8
(-3)
A 		12.2
(-2.1)
A 		58.9
(3)
P 		55
C 15.3
(-2.4)
A 		11.4
(-3)
A 		16.3
(-2.3)
A 		53.5
(3)
P 		42
avr 16.2
(-1.8) 		6.8
(-3) 		13.3
(-2.2) 		55.7
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 13.7
(-1.5)
A 		24.1
(3)
A 		13
(-1.8)
A 		14.7
(-1.1)
A 		21
(1.7)
A 		10.2
(-3)
A 		14
B 12.1
(-3)
A 		12.9
(-2.7)
A 		19.7
(0.1)
M 		13
(-2.6)
A 		27
(3)
P 		20.4
(0.3)
P 		15
C 15.8
(2)
A 		17.9
(3)
A 		5.1
(-3)
A 		13.3
(0.8)
A 		13.6
(1)
A 		11.2
(-0.1)
A 		13
avr 13.9
(-2) 		18.3
(1.3) 		12.6
(-3) 		13.7
(-2.2) 		20.5
(3) 		13.9
(-2) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186747_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.618
Sequence Type Exemplar sequence
Representative Public ID Y110A7A.2 NCBI
Target Description Y110A7A.2 /REP_DB=WormBase Gene ID /WP=CE24122 /TR=Q9N586 /GB=AAF60420.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059133(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059133 NCBI Caenorhabditis elegans Y110A7A.2 (Y110A7A.2) mRNA, complete cds. 11/11 None
SNAP00000029217 ENSEMBL cdna:SNAP chromosome:CEL140:I:5154532:5158470:1 11/11 None
GENEFINDER00000029240 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5154532:5157322:1 11/11 None
Y110A7A.2 ENSEMBL cdna:known chromosome:CEL140:I:5154532:5158470:1 gene:Y110A7A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5154531-5157044(+) 99.61 100.0
Public Domain and Genome References
Gene Title
Ensembl Y110A7A.2
Entrez Gene 172151 Entrez gene
SwissProt Q9N586 EMBL-EBI
WormBase CE30308 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60420 Hypothetical protein Y110A7A.2 [Caenorhabditis elegans] ref|NP_491534.2| Y110A7A.2 [Caenorhabditis elegans] 0.0
blast CAE56136 Hypothetical protein CBG23748 [Caenorhabditis briggsae] 1.0E-148
blast AAF60420 Hypothetical protein Y110A7A.2 [Caenorhabditis elegans] ref|NP_491534.2| Y110A7A.2 [Caenorhabditis elegans] 1.0E-146
blast CAE56136 Hypothetical protein CBG23748 [Caenorhabditis briggsae] 1.0E-115
blast CAB07615 Hypothetical protein F45G2.6 [Caenorhabditis elegans] ref|NP_499773.2| TNF Receptor Associated Factor (TRAF) homolog family member (trf-1) [Caenorhabditis elegans] gb|AAK37546.1| TRF-1 [Caenorhabditis elegans] 2.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 1.9E-8
Sequence
Target Sequence 
>C. ELEGANS:186747_AT
gaacttcaactcgatctgtgggcgtttcaattccaatccacgtggaaggcgaggagccaa
ctgctcctaaatccattgtgccggataattggattgattgtccgtttaaagaacatggat
gtcataaaaaaggcgaaaactctgaagttaaaagacacgtgagagatgatagaaatctcc
atttggttcttttgtgccagtcactcaatccaattcgtaccaaaatcaacatccaacaat
ctgcctatgttgataaatacgtgggaatgcttcaatacatgagcattgcagaatcggcat
tcgagaaatatggaagccaacatacattccgtattccaaaaattggattgactgtcgtaa
aagcgacaaagaacaaatctcatcgatcgatttatagtcaaccattttattctcatggtt
atgggtataaaatgatggctgttgctgcaccatatggtgatggactcgcatttcgcgagt
atttctctgtgtttgtttgtctcatgaaaggcgaatgggatgatattctcgagtggccat
ttcgttgtgacgtcacgttttcgattcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTTCAACTCGATCTGTGGGCGT 265 351 170 Antisense
CTGTGGGCGTTTCAATTCCAATCCA 111 241 185 Antisense
GCCAACTGCTCCTAAATCCATTGTG 450 277 225 Antisense
TTGGTTCTTTTGTGCCAGTCACTCA 536 703 352 Antisense
GTCACTCAATCCAATTCGTACCAAA 291 465 369 Antisense
AATCAACATCCAACAATCTGCCTAT 483 171 393 Antisense
TGGCTGTTGCTGCACCATATGGTGA 192 543 605 Antisense
ATGGTGATGGACTCGCATTTCGCGA 242 51 623 Antisense
GAGTATTTCTCTGTGTTTGTTTGTC 389 399 646 Antisense
GAGTGGCCATTTCGTTGTGACGTCA 10 401 700 Antisense
TGTGACGTCACGTTTTCGATTCTTT 357 555 715 Antisense
Sequence Source Affymetrix Proprietary Database