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[186745_s_at]

Description Y38E10A.17 /REP_DB=WormBase Gene ID /WP=CE21597 /TR=Q9NAJ4 /GB=CAB54408.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 35      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 57.3
(3)
A 		17.7
(-3)
A 		57
(3)
A 		54.4
(2.6)
A 		40
B 36.3
(-1.9)
A 		68.9
(3)
A 		28.8
(-3)
A 		64.2
(2.3)
A 		40
C 18.3
(-3)
A 		63.8
(3)
A 		22.6
(-2.4)
A 		25.4
(-2.1)
A 		46
avr 37.3
(-2.5) 		50.1
(3) 		36.1
(-3) 		48
(2.1) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 398
1 2 3 4 5 6 range
A 17.8
(-3)
A 		27
(-2.9)
A 		24.2
(-2.9)
A 		64
(-2.3)
A 		116.2
(-1.5)
A 		402.2
(3)
P 		384
B 4.7
(-3)
A 		21
(-2.7)
A 		18.5
(-2.7)
A 		67.6
(-1.7)
A 		172.1
(0.5)
A 		290
(3)
P 		285
C 9
(-2.9)
A 		33.1
(-2.5)
A 		6.3
(-3)
A 		93.6
(-1.4)
A 		186.5
(0.4)
A 		324.1
(3)
P 		318
avr 10.5
(-3) 		27
(-2.7) 		16.3
(-2.9) 		75.1
(-1.8) 		158.3
(-0.3) 		338.8
(3) 		328
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 20.9
(3)
A 		3.8
(-3)
A 		14.9
(0.9)
A 		8
(-1.5)
A 		17
B 11.6
(-0.1)
A 		17
(3)
A 		6.7
(-3)
A 		13.7
(1.1)
A 		10
C 6.1
(-2.2)
A 		18.4
(3)
A 		7.9
(-1.5)
A 		4.3
(-3)
A 		14
avr 12.9
(2.7) 		13.1
(3) 		9.8
(-1.5) 		8.7
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 3.3
(-3)
A 		9.6
(-2.6)
A 		5.3
(-2.9)
A 		16.2
(-2.2)
A 		35.1
(-1)
A 		97.9
(3)
P 		95
B 1.6
(-3)
A 		7
(-2.7)
A 		4.5
(-2.8)
A 		17.9
(-2.1)
A 		69.9
(0.8)
A 		108.1
(3)
P 		107
C 3.3
(-2.9)
A 		10.1
(-2.5)
A 		1.6
(-3)
A 		18.8
(-2)
A 		60.3
(0.3)
A 		108.5
(3)
P 		107
avr 2.7
(-3) 		8.9
(-2.6) 		3.8
(-2.9) 		17.6
(-2.1) 		55.1
(0.1) 		104.8
(3) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186745_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3066
Sequence Type Exemplar sequence
Representative Public ID Y38E10A.17 NCBI
Target Description Y38E10A.17 /REP_DB=WormBase Gene ID /WP=CE21597 /TR=Q9NAJ4 /GB=CAB54408.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064299(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064299 NCBI Caenorhabditis elegans Y38E10A.17 (Y38E10A.17) mRNA, complete cds. 11/11 None
SNAP00000017445 ENSEMBL cdna:SNAP chromosome:CEL140:II:12632536:12636998:-1 11/11 None
GENEFINDER00000017476 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12632536:12634568:-1 11/11 None
Y38E10A.17 ENSEMBL cdna:known chromosome:CEL140:II:12632533:12634620:-1 gene:Y38E10A.17 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12632532-12634565(-) 95.46 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38E10A.17
Entrez Gene 174897 Entrez gene
SwissProt Q9NAJ4 EMBL-EBI
WormBase CE21597 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54408 Hypothetical protein Y38E10A.17 [Caenorhabditis elegans] ref|NP_496700.1| Y38E10A.17 [Caenorhabditis elegans] 0.0
blast CAE60527 Hypothetical protein CBG04150 [Caenorhabditis briggsae] 1.0E-132
Sequence
Target Sequence 
>C. ELEGANS:186745_S_AT
ggcgaaggttcaagccgcagtcactggacaatcagcggatcatatccaagagcaagtcaa
cagaattggagttccggaggccgctgccacaagtgctgctaatggaggaaataatgctgg
aggtggaggaagtagtgcagaggtgagatcagttggatttggagctcagcagtttggtgg
cagtcaatttgcaagaccaattcccgctggaggaggtggaggaggatctggtggatatgg
agctggaggcggaggaagtggtggatatggagctggtggagctggaggtgccagaaactc
tgcatcaaatggatcgtatggatcttctgcaaatgaagtcaaatcggtaggattcggagc
tcaacaatatggaggaagtgtattcgccaaaccatctggaactggtggaggatatgtgtc
tgctggatcgtccgcaagaaagtctggagaatctggagctggtggaggaggagctggtgg
aggaaaggctggtggagcgaaaaactctgcatcgtatggatcttctgcaaacgaggttaa
atctgtgggtttcggagcccaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGAAGGTTCAAGCCGCAGTCACT 440 539 1179 Antisense
CAGAATTGGAGTTCCGGAGGCCGCT 73 205 1239 Antisense
CCGCTGCCACAAGTGCTGCTAATGG 311 263 1259 Antisense
GAGCTCAGCAGTTTGGTGGCAGTCA 534 387 1340 Antisense
AAGACCAATTCCCGCTGGAGGAGGT 650 151 1371 Antisense
GGAGGTGCCAGAAACTCTGCATCAA 242 517 1462 Antisense
ATCGGTAGGATTCGGAGCTCAACAA 422 33 1521 Antisense
GTGTATTCGCCAAACCATCTGGAAC 439 485 1556 Antisense
TGTCTGCTGGATCGTCCGCAAGAAA 628 555 1595 Antisense
AACTCTGCATCGTATGGATCTTCTG 431 141 1681 Antisense
AATCTGTGGGTTTCGGAGCCCAACA 513 167 1718 Antisense
Sequence Source Affymetrix Proprietary Database