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[186743_at]

Description C09G5.7 /REP_DB=WormBase Gene ID /WP=CE01487 /TR=SW:Q09458 /GB=CAA86759.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 36      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 28.9
(-0.6)
A 		49.2
(3)
A 		24.8
(-1.3)
A 		15.5
(-3)
A 		34
B 16.2
(-2.4)
A 		42.4
(3)
A 		13.1
(-3)
A 		36.7
(1.8)
A 		29
C 32
(3)
A 		16.1
(-3)
A 		17.4
(-2.5)
A 		19.6
(-1.7)
A 		16
avr 25.7
(-0.5) 		35.9
(3) 		18.4
(-3) 		23.9
(-1.1) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 43.9
(-1.1)
A 		25.4
(-2.7)
A 		32.4
(-2.1)
A 		22.4
(-3)
A 		83.1
(2.4)
A 		89.7
(3)
A 		67
B 17.7
(-2.2)
A 		6.8
(-3)
A 		32.4
(-1.2)
A 		43.4
(-0.4)
A 		66.2
(1.3)
A 		90.5
(3)
A 		84
C 31.5
(-3)
A 		47.7
(-0.8)
A 		40.7
(-1.7)
A 		34.5
(-2.6)
A 		50.2
(-0.4)
A 		74.8
(3)
A 		43
avr 31
(-2.5) 		26.6
(-3) 		35.2
(-2.1) 		33.4
(-2.3) 		66.5
(1.1) 		85
(3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 10.5
(2.9)
A 		10.7
(3)
A 		6.5
(0)
A 		2.3
(-3)
A 		8
B 5.2
(-1.2)
A 		10.5
(3)
A 		3
(-3)
A 		7.8
(0.8)
A 		8
C 10.6
(3)
A 		4.6
(-1.9)
A 		6.1
(-0.7)
A 		3.3
(-3)
A 		7
avr 8.8
(3) 		8.6
(2.7) 		5.2
(-2) 		4.5
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 8.1
(-2.3)
A 		9
(-2)
A 		7.1
(-2.6)
A 		5.7
(-3)
A 		25.1
(3)
A 		21.8
(2)
A 		19
B 6.2
(-2.3)
A 		2.3
(-3)
A 		7.9
(-1.9)
A 		11.5
(-1.2)
A 		26.9
(1.7)
A 		33.7
(3)
A 		31
C 11.7
(-1.4)
A 		14.6
(-0.4)
A 		10.3
(-1.9)
A 		6.9
(-3)
A 		16.2
(0.1)
A 		25
(3)
A 		18
avr 8.7
(-2.8) 		8.6
(-2.8) 		8.4
(-2.9) 		8
(-3) 		22.7
(1.7) 		26.8
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186743_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3416
Sequence Type Exemplar sequence
Representative Public ID C09G5.7 NCBI
Target Description C09G5.7 /REP_DB=WormBase Gene ID /WP=CE01487 /TR=SW:Q09458 /GB=CAA86759.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063911(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063911 NCBI Caenorhabditis elegans C09G5.7 (C09G5.7) mRNA, complete cds. 11/11 None
SNAP00000014223 ENSEMBL cdna:SNAP chromosome:CEL140:II:10708925:10716248:1 11/11 None
GENEFINDER00000014234 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10714824:10716248:1 11/11 None
C09G5.7 ENSEMBL cdna:known chromosome:CEL140:II:10714824:10716248:1 gene:C09G5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10714820-10716245(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C09G5.7
Entrez Gene 182461 Entrez gene
SwissProt Q09458 EMBL-EBI
WormBase CE01487 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86755 Hypothetical protein C09G5.6 [Caenorhabditis elegans] ref|NP_496311.2| C09G5.6 [Caenorhabditis elegans] 0.0
blast Q09457 Cuticle collagen bli-1 0.0
blast CAE59617 Hypothetical protein CBG03026 [Caenorhabditis briggsae] 0.0
blast CAA86759 Hypothetical protein C09G5.7 [Caenorhabditis elegans] ref|NP_496312.1| C09G5.7 [Caenorhabditis elegans] sp|Q09458|YQ37_CAEEL Hypothetical protein C09F5.7 in chromosome II 1.0E-177
blast CAE73209 Hypothetical protein CBG20614 [Caenorhabditis briggsae] 8.0E-72
blast CAA99815 Hypothetical protein C54G4.2 [Caenorhabditis elegans] ref|NP_492203.1| C54G4.2 [Caenorhabditis elegans] 2.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR002486 EMBL-EBI Nematode cuticle collagen, N-terminal 5.7E-21
Pfam IPR008160 EMBL-EBI Collagen triple helix repeat 0.0015
Pfam IPR008160 EMBL-EBI Collagen triple helix repeat 3.5E-12
Pfam IPR008160 EMBL-EBI Collagen triple helix repeat 2.1E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000014223 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:186743_AT
tgaacctgtttgggtggtcccggatcgtaagcccggcgagctggtgatgaatgagcatgg
agaaatggtcaagtatcctgagttgatggctgcgttagaagaagatggattggagatgga
agatggtaaaggatggtttcaaaagatgtcctcgtatttgatgggagagttggatcaagg
aagaatcgacaataaggcagcatcgaaggatatcaacccatttgcatcgatggaaacttt
ggaagaaaggacggatttgtattttagcagggagaccgttatctacaatacgactgactc
gatcttcaatttgtgccacaatgcaattgaacgtttctcccaacaaaacaacgaggatac
aatccgcaaaagtgtcccaccatcgagagaaccggggtcaaagatgatgaccgtgtcaaa
ggatgaggaagagaagactgccattgttacttcgatacgtttcgatgctcgagcatacag
gatcagttatgatcgtcgtcgtccagttcactcaattcagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAACCTGTTTGGGTGGTCCCGGAT 290 457 591 Antisense
ATCGTAAGCCCGGCGAGCTGGTGAT 486 35 614 Antisense
GTATCCTGAGTTGATGGCTGCGTTA 273 453 663 Antisense
GGATATCAACCCATTTGCATCGATG 199 511 798 Antisense
GACTCGATCTTCAATTTGTGCCACA 135 375 886 Antisense
TGCAATTGAACGTTTCTCCCAACAA 14 577 912 Antisense
ATACAATCCGCAAAAGTGTCCCACC 238 25 947 Antisense
TGTCCCACCATCGAGAGAACCGGGG 527 555 963 Antisense
GACTGCCATTGTTACTTCGATACGT 281 375 1026 Antisense
GATACGTTTCGATGCTCGAGCATAC 493 423 1044 Antisense
GTCGTCCAGTTCACTCAATTCAGAA 530 471 1088 Antisense
Sequence Source Affymetrix Proprietary Database