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[186741_at]

Description ZK673.5 /REP_DB=WormBase Gene ID /WP=CE02394 /TR=SW:Q09664 /GB=CAA88483.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 0      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 71.5
(-0.5)
A 		15.4
(-3)
A 		80
(-0.1)
A 		147.7
(3)
A 		132
B 58.8
(-3)
A 		61.1
(-2.5)
A 		59.3
(-2.9)
A 		83.9
(3)
A 		25
C 43.9
(-3)
A 		65.3
(0.1)
A 		56.1
(-1.2)
A 		85.6
(3)
A 		42
avr 58.1
(-1.9) 		47.3
(-3) 		65.1
(-1.2) 		105.7
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 92.7
(2.1)
A 		64.3
(0.3)
A 		72.8
(0.9)
A 		12.4
(-3)
A 		61.6
(0.2)
A 		106.1
(3)
A 		94
B 78
(0.8)
A 		74.8
(0.1)
A 		81.5
(1.6)
A 		61
(-3)
A 		87.6
(3)
A 		69.8
(-1)
A 		27
C 58.3
(0.1)
A 		86.4
(3)
A 		59.5
(0.2)
A 		79.7
(2.3)
A 		28
(-3)
A 		33.8
(-2.4)
A 		58
avr 76.3
(3) 		75.2
(2.7) 		71.3
(1.8) 		51
(-3) 		59.1
(-1.1) 		69.9
(1.5) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 26.1
(3)
A 		3.3
(-3)
A 		20.9
(1.6)
A 		21.6
(1.8)
A 		23
B 18.8
(3)
A 		15.1
(-1.4)
A 		13.7
(-3)
A 		17.9
(1.9)
A 		5
C 14.5
(-2.9)
A 		18.8
(2.1)
A 		19.6
(3)
A 		14.4
(-3)
A 		5
avr 19.8
(3) 		12.4
(-3) 		18.1
(1.6) 		18
(1.5) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 17.1
(0.7)
A 		22.9
(2.2)
A 		15.9
(0.4)
A 		3.2
(-3)
A 		18.6
(1.1)
A 		25.8
(3)
A 		23
B 27.1
(0.4)
A 		24.9
(-0.3)
A 		19.8
(-1.9)
A 		16.2
(-3)
A 		35.6
(3)
A 		26
(0)
A 		19
C 21.6
(1.3)
A 		26.4
(3)
A 		15.1
(-0.9)
A 		16
(-0.6)
A 		9.1
(-3)
A 		11.3
(-2.2)
A 		17
avr 21.9
(1.7) 		24.7
(3) 		16.9
(-0.6) 		11.8
(-3) 		21.1
(1.3) 		21
(1.3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186741_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3436
Sequence Type Exemplar sequence
Representative Public ID ZK673.5 NCBI
Target Description ZK673.5 /REP_DB=WormBase Gene ID /WP=CE02394 /TR=SW:Q09664 /GB=CAA88483.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063847(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063847 NCBI Caenorhabditis elegans ZK673.5 (ZK673.5) mRNA, complete cds. 11/11 None
SNAP00000007629 ENSEMBL cdna:SNAP chromosome:CEL140:II:10461417:10461857:1 11/11 None
GENEFINDER00000007638 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10461417:10462578:1 11/11 None
ZK673.5 ENSEMBL cdna:known chromosome:CEL140:II:10461381:10461857:1 gene:ZK673.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10461413-10461854(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK673.5
Entrez Gene 174610 Entrez gene
SwissProt Q09664 EMBL-EBI
WormBase CE02394 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88483 Hypothetical protein ZK673.5 [Caenorhabditis elegans] ref|NP_496248.1| ZK673.5 [Caenorhabditis elegans] sp|Q09664|YS55_CAEEL Hypothetical protein ZK673.5 in chromosome II 2.0E-62
blast CAA88483 Hypothetical protein ZK673.5 [Caenorhabditis elegans] ref|NP_496248.1| ZK673.5 [Caenorhabditis elegans] sp|Q09664|YS55_CAEEL Hypothetical protein ZK673.5 in chromosome II 8.0E-59
blast CAA88484 Hypothetical protein ZK673.10 [Caenorhabditis elegans] ref|NP_496250.1| ZK673.10 [Caenorhabditis elegans] 1.0E-43
blast CAA88484 Hypothetical protein ZK673.10 [Caenorhabditis elegans] ref|NP_496250.1| ZK673.10 [Caenorhabditis elegans] 6.0E-43
blast CAD59166 Hypothetical protein ZK673.11 [Caenorhabditis elegans] ref|NP_872056.1| ZK673.11 [Caenorhabditis elegans] 2.0E-42
blast CAA88983 Hypothetical protein ZK666.4 [Caenorhabditis elegans] ref|NP_496257.1| ZK666.4 [Caenorhabditis elegans] 3.0E-40
Sequence
Target Sequence 
>C. ELEGANS:186741_AT
catccgcagctctttacaacaatgctgatattttccaattcttccctcggaacaagcgtc
tcaattctcatcaaaagtctcgccttgatgagcatgctcggaaaatggctgctttcatga
tggagagacaagaagaataccgctactacgagaacttggccaatcaggaacagttctccg
atgacaatggaatggaatcaggattctgcagtggagccacttcaactggacaatcagctt
caacatctcctgctccagttcagctcattccaaacccattctttgatccagaatatgttg
ctgccaaaactcagtctccagtgaagctcgtcaccaacccattcttcaatccagagcttg
tcgagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCCGCAGCTCTTTACAACAATGC 444 211 32 Antisense
GGAACAAGCGTCTCAATTCTCATCA 292 529 80 Antisense
CAATTCTCATCAAAAGTCTCGCCTT 25 181 93 Antisense
CAAAAGTCTCGCCTTGATGAGCATG 443 189 103 Antisense
GAGACAAGAAGAATACCGCTACTAC 540 391 156 Antisense
AGAATACCGCTACTACGAGAACTTG 615 69 165 Antisense
ACAGTTCTCCGATGACAATGGAATG 168 107 201 Antisense
TGTTGCTGCCAAAACTCAGTCTCCA 628 561 327 Antisense
TCAGTCTCCAGTGAAGCTCGTCACC 197 623 342 Antisense
CAACCCATTCTTCAATCCAGAGCTT 368 187 366 Antisense
TCTTCAATCCAGAGCTTGTCGAGGA 447 615 374 Antisense
Sequence Source Affymetrix Proprietary Database