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[186740_s_at]

Description Y59E9AR.4 /REP_DB=WormBase Gene ID /WP=CE25516 /TR=Q9N326 /GB=AAF60832.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 11      6grp_cgc > 37      6grp_cgc_sub > Cu      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 4.9
(-2.9)
A 		5.6
(-2.8)
A 		3.5
(-3)
A 		60.1
(3)
A 		57
B 25.1
(0.6)
A 		2.9
(-3)
A 		7.3
(-2.3)
A 		39.4
(3)
A 		37
C 6.3
(-2.8)
A 		40.4
(-1)
A 		1.9
(-3)
A 		120.1
(3)
A 		118
avr 12.1
(-2.3) 		16.3
(-1.9) 		4.2
(-3) 		73.2
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 10.8
(-2.4)
A 		4.8
(-2.9)
A 		4.2
(-3)
A 		46.8
(0.6)
A 		5.7
(-2.9)
A 		75.5
(3)
A 		71
B 6.2
(1.1)
A 		1.9
(-3)
A 		1.9
(-3)
A 		4.4
(-0.6)
A 		8.2
(3)
A 		7.9
(2.7)
A 		6
C 5.3
(-2.7)
A 		49.5
(3)
A 		2.6
(-3)
A 		30.9
(0.6)
A 		3.6
(-2.9)
A 		29.3
(0.4)
A 		47
avr 7.4
(-2.2) 		18.7
(-0.3) 		2.9
(-3) 		27.4
(1.2) 		5.8
(-2.5) 		37.6
(3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 1.8
(-2.3)
A 		1.2
(-2.8)
A 		0.9
(-3)
A 		8.8
(3)
A 		8
B 8
(2.7)
A 		0.7
(-3)
A 		1.7
(-2.2)
A 		8.4
(3)
A 		8
C 2.1
(-2.6)
A 		11.6
(0.3)
A 		0.7
(-3)
A 		20.3
(3)
A 		20
avr 4
(-1.5) 		4.5
(-1.2) 		1.1
(-3) 		12.5
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 2
(-2.6)
A 		1.7
(-2.7)
A 		0.9
(-3)
A 		11.9
(0.8)
A 		1.7
(-2.7)
A 		18.4
(3)
A 		18
B 2.2
(0.6)
A 		0.6
(-2.8)
A 		0.5
(-3)
A 		1.2
(-1.5)
A 		3.3
(3)
A 		3
(2.4)
A 		3
C 2
(-2.5)
A 		15.1
(3)
A 		0.7
(-3)
A 		6.2
(-0.7)
A 		1.2
(-2.8)
A 		9.8
(0.8)
A 		14
avr 2.1
(-2.1) 		5.8
(0.2) 		0.7
(-3) 		6.4
(0.5) 		2.1
(-2.1) 		10.4
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186740_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10489
Sequence Type Exemplar sequence
Representative Public ID Y59E9AR.4 NCBI
Target Description Y59E9AR.4 /REP_DB=WormBase Gene ID /WP=CE25516 /TR=Q9N326 /GB=AAF60832.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068347(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068347 NCBI Caenorhabditis elegans THaumatiN family member (thn-5) (thn-5) mRNA, complete cds. 10/11 None
SNAP00000034125 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5230822:5232468:1 10/11 None
SNAP00000034128 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5237907:5238591:-1 10/11 None
GENEFINDER00000034139 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5230822:5232468:1 10/11 None
GENEFINDER00000034142 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5237907:5239503:-1 10/11 None
Y59E9AR.4 ENSEMBL cdna:known chromosome:CEL140:IV:5230822:5232468:1 gene:Y59E9AR.4 10/11 None
Y59E9AR.6 ENSEMBL cdna:known chromosome:CEL140:IV:5237907:5239499:-1 gene:Y59E9AR.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5230827-5232474(+) 100.0 100.0
chrIV:5237912-5238562(-) 69.07 69.07
Public Domain and Genome References
Gene Title
Gene Symbol thn-5
Ensembl Y59E9AR.4
Y59E9AR.6
Entrez Gene 190420 Entrez gene
SwissProt Q9N326 EMBL-EBI
WormBase CE35126 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:20403_AT pathogenesis-related thaumatin family protein at
ATH1-121501:264812_AT pathogenesis-related thaumatin family protein at
Protein Similarities
Method ID Description E-Value
blast AAF60832 Thaumatin family protein 5 [Caenorhabditis elegans] ref|NP_500748.2| THaumatiN family member (thn-5) [Caenorhabditis elegans] 1.0E-132
blast CAE72818 Hypothetical protein CBG20099 [Caenorhabditis briggsae] 1.0E-105
blast AAF60832 Thaumatin family protein 5 [Caenorhabditis elegans] ref|NP_500748.2| THaumatiN family member (thn-5) [Caenorhabditis elegans] 3.0E-87
blast AAF60832 Thaumatin family protein 5 [Caenorhabditis elegans] ref|NP_500748.2| THaumatiN family member (thn-5) [Caenorhabditis elegans] 7.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR001938 EMBL-EBI Thaumatin, pathogenesis-related 2.3E-98
Pfam IPR001938 EMBL-EBI Thaumatin, pathogenesis-related 5.4E-62
Pfam IPR001938 EMBL-EBI Thaumatin, pathogenesis-related 5.8E-65
Pfam IPR001938 EMBL-EBI Thaumatin, pathogenesis-related 5.8E-65
Sequence
Target Sequence 
>C. ELEGANS:186740_S_AT
cggcgggagcaatgcaacggcgctggtggagagcctccggcaagtctcgccgaatttact
ctccgtggagctgatggaaaagatttttatgatgtttcgcttgttgatggatataatatt
ccagttcttattgatccttatggtggtgagggtgattgtagaagagcaggaggatgtttc
aaaaatatcaatgatttctgtccaggcgatcttgcagtgagaaaaggtaagtggcgtcat
ttttgctttaatcacggaatggataatacttttactttgaaaaagttcagaaataatcac
atattgaaacagaacaaatttttaaaaactaaaatttctccaactgtttcaatttcagat
ggtcgtaccgttggctgtaaatctggttgtgttgcttacaacaacgatcaggaatgctgc
cgtggagcatttggaactcctgacaaatgtagacaaagcagaactgcaatgcttttcaaa
gatgcttgtccaactgcatattcttatgcttatgatgatgctacttccacttttac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGCGGGAGCAATGCAACGGCGCTG 55 243 271 Antisense
TGCAACGGCGCTGGTGGAGAGCCTC 173 577 283 Antisense
CCTCCGGCAAGTCTCGCCGAATTTA 252 265 304 Antisense
ATTCCAGTTCTTATTGATCCTTATG 608 7 388 Antisense
ATTTCTGTCCAGGCGATCTTGCAGT 233 17 464 Antisense
AATTTCTCCAACTGTTTCAATTTCA 546 173 603 Antisense
GATGGTCGTACCGTTGGCTGTAAAT 448 405 628 Antisense
GGCTGTAAATCTGGTTGTGTTGCTT 314 541 643 Antisense
CAACGATCAGGAATGCTGCCGTGGA 645 187 672 Antisense
GCTTGTCCAACTGCATATTCTTATG 62 307 754 Antisense
ATGATGATGCTACTTCCACTTTTAC 593 45 782 Antisense
Sequence Source Affymetrix Proprietary Database