[Home] | [Total List]

[186739_at]

Description Y105C5B.20 /REP_DB=WormBase Gene ID /WP=CE24070 /TR=Q9NAM1 /GB=CAB54366.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 2.1
(-3)
A 		31.2
(-1)
A 		6.2
(-2.7)
A 		87.6
(3)
A 		86
B 5.2
(-2.5)
A 		5.2
(-2.5)
A 		4.3
(-3)
A 		14.3
(3)
A 		10
C 3.9
(-3)
A 		4
(-3)
A 		5.3
(-2.5)
A 		20
(3)
A 		16
avr 3.7
(-3) 		13.5
(-1.4) 		5.3
(-2.7) 		40.6
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 10.6
(-0.7)
A 		2.3
(-2.8)
A 		17.3
(1)
A 		3.4
(-2.5)
A 		25.1
(3)
A 		1.5
(-3)
A 		24
B 2.7
(-3)
A 		3.5
(-2.8)
A 		32.5
(3)
A 		14.7
(-0.6)
A 		14.4
(-0.6)
A 		14.8
(-0.6)
A 		30
C 3
(-2.5)
A 		10.4
(0.9)
A 		1.9
(-3)
A 		15.1
(3)
A 		4.8
(-1.7)
A 		5.5
(-1.4)
A 		13
avr 5.4
(-3) 		5.4
(-3) 		17.2
(3) 		11.1
(-0.1) 		14.8
(1.8) 		7.3
(-2) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 0.8
(-3)
A 		6.8
(0)
A 		1.6
(-2.6)
A 		12.8
(3)
A 		12
B 1.7
(-0.9)
A 		1.3
(-2.1)
A 		1
(-3)
A 		3
(3)
A 		2
C 1.3
(-2.7)
A 		1.2
(-3)
A 		1.8
(-1.4)
A 		3.4
(3)
A 		2
avr 1.3
(-3) 		3.1
(-0.9) 		1.5
(-2.8) 		6.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 2
(-1.7)
A 		0.8
(-2.7)
A 		3.8
(-0.2)
A 		0.9
(-2.6)
A 		7.6
(3)
A 		0.4
(-3)
A 		7
B 0.9
(-3)
A 		1.2
(-2.7)
A 		7.9
(3)
A 		3.9
(-0.4)
A 		5.8
(1.2)
A 		5.5
(0.9)
A 		7
C 1.1
(-1.7)
A 		3.2
(3)
A 		0.5
(-3)
A 		3
(2.6)
A 		1.5
(-0.8)
A 		1.8
(-0.1)
A 		3
avr 1.3
(-3) 		1.7
(-2.4) 		4.1
(1.5) 		2.6
(-0.9) 		5
(3) 		2.6
(-0.9) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186739_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9527
Sequence Type Exemplar sequence
Representative Public ID Y105C5B.20 NCBI
Target Description Y105C5B.20 /REP_DB=WormBase Gene ID /WP=CE24070 /TR=Q9NAM1 /GB=CAB54366.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070508(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070508 NCBI Caenorhabditis elegans Y105C5B.20 (Y105C5B.20) mRNA, complete cds. 11/11 None
SNAP00000018404 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15993644:15994404:-1 11/11 None
GENEFINDER00000018434 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15993644:15994404:-1 11/11 None
Y105C5B.20 ENSEMBL cdna:known chromosome:CEL140:IV:15993644:15994404:-1 gene:Y105C5B.20 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15993649-15994410(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105C5B.20
Entrez Gene 190897 Entrez gene
SwissProt Q9NAM1 EMBL-EBI
WormBase CE24070 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54366 Hypothetical protein Y105C5B.20 [Caenorhabditis elegans] ref|NP_502909.1| Y105C5B.20 [Caenorhabditis elegans] 1.0E-121
blast CAA91759 Hypothetical protein F54F7.6 [Caenorhabditis elegans] ref|NP_509980.1| F54F7.6 [Caenorhabditis elegans] 2.0E-33
blast CAE56668 Hypothetical protein CBG24440 [Caenorhabditis briggsae] 3.0E-33
Sequence
Target Sequence 
>C. ELEGANS:186739_AT
atcgaatatttcatctgtgctccattcagtggacaacgtctacgtggaacggctcgtcct
ggtcaaaccgtagttttccgtcagcagaatctgacaaatgtggtggagaagctggggaaa
aactcattccgatgcattgtcaaggccgatgagcttccgaaaagcttccaaaagagccag
gaatttgttgtggcaagagggagattccagcagtttctgaaagtcgctgaaggatctcgc
ttatcgaaattggagccaatgagtgacactgaaatggcatccaatgcaatcaaggatgtt
cgggaaatggctgagcaggatcttatcggttctaggaaaactccattttatgagatgttc
acacgatttgcccagcagaaagtgacatcatcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGAATATTTCATCTGTGCTCCAT 453 37 88 Antisense
GTGCTCCATTCAGTGGACAACGTCT 427 477 104 Antisense
GTCAAACCGTAGTTTTCCGTCAGCA 100 465 149 Antisense
CTCATTCCGATGCATTGTCAAGGCC 284 229 210 Antisense
TGTCAAGGCCGATGAGCTTCCGAAA 68 559 225 Antisense
GCAAGAGGGAGATTCCAGCAGTTTC 503 319 280 Antisense
AGTCGCTGAAGGATCTCGCTTATCG 284 61 309 Antisense
GAGTGACACTGAAATGGCATCCAAT 528 401 348 Antisense
GGCTGAGCAGGATCTTATCGGTTCT 527 539 396 Antisense
TGAGATGTTCACACGATTTGCCCAG 221 569 438 Antisense
GCCCAGCAGAAAGTGACATCATCGG 280 287 457 Antisense
Sequence Source Affymetrix Proprietary Database