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[186738_s_at] G-protein coupled receptor, srg family

Description Y105C5A.11 /REP_DB=WormBase Gene ID /WP=CE24051 /TR=Q9U324 /GB=CAB60301.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 19      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 2.4
(-3)
A 		5.7
(-2.6)
A 		2.6
(-3)
A 		52.9
(3)
A 		51
B 9.7
(1.5)
A 		5.8
(-0.8)
A 		2.2
(-3)
A 		12.1
(3)
A 		10
C 3.5
(-2.8)
A 		37.9
(3)
A 		2.5
(-3)
A 		31.9
(2)
A 		35
avr 5.2
(-2.4) 		16.5
(-0.2) 		2.4
(-3) 		32.3
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 15.5
(1.2)
A 		21.2
(3)
A 		3.6
(-2.4)
A 		14.1
(0.8)
A 		2.1
(-2.9)
A 		1.7
(-3)
A 		20
B 6.2
(-2.5)
A 		18
(0.7)
A 		26.5
(3)
A 		15.9
(0.1)
A 		4.4
(-3)
A 		11.9
(-1)
A 		22
C 3.9
(-2.6)
A 		24.4
(0.6)
A 		1.4
(-3)
A 		39.7
(3)
A 		1.6
(-3)
A 		22.1
(0.2)
A 		38
avr 8.5
(-1.3) 		21.2
(2.4) 		10.5
(-0.7) 		23.2
(3) 		2.7
(-3) 		11.9
(-0.3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 0.9
(-2.8)
A 		1.2
(-2.6)
A 		0.7
(-3)
A 		7.7
(3)
A 		7
B 3.1
(3)
A 		1.4
(-0.9)
A 		0.5
(-3)
A 		2.6
(1.8)
A 		3
C 1.2
(-2.8)
A 		10.9
(3)
A 		0.9
(-3)
A 		5.4
(-0.3)
A 		10
avr 1.7
(-1.7) 		4.5
(2.1) 		0.7
(-3) 		5.2
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 2.9
(-0.9)
A 		7.5
(3)
A 		0.8
(-2.7)
A 		3.6
(-0.3)
A 		0.6
(-2.8)
A 		0.4
(-3)
A 		7
B 2.2
(-2.5)
A 		6
(2.5)
A 		6.4
(3)
A 		4.2
(0.1)
A 		1.8
(-3)
A 		4.5
(0.5)
A 		5
C 1.4
(-2.2)
A 		7.4
(2.5)
A 		0.4
(-3)
A 		8
(3)
A 		0.5
(-2.9)
A 		7.4
(2.5)
A 		8
avr 2.2
(-1.8) 		7
(3) 		2.5
(-1.5) 		5.3
(1.3) 		1
(-3) 		4.1
(0.1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186738_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9273
Sequence Type Exemplar sequence
Representative Public ID Y105C5A.11 NCBI
Target Description Y105C5A.11 /REP_DB=WormBase Gene ID /WP=CE24051 /TR=Q9U324 /GB=CAB60301.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027319(11), NM_001027320(11), NM_070478(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027319 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-20) (srg-20) mRNA, complete cds. 11/11 None
NM_001027320 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-20) (srg-20) mRNA, complete cds. 11/11 None
NM_070478 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-19) (srg-19) mRNA, complete cds. 11/11 None
SNAP00000031402 ENSEMBL cdna:SNAP chromosome:CEL140:II:1636695:1638606:1 11/11 None
ZC204.4a ENSEMBL cdna:known chromosome:CEL140:II:1636695:1638970:1 gene:ZC204.4 11/11 None
ZC204.4b ENSEMBL cdna:known chromosome:CEL140:II:1636695:1638586:1 gene:ZC204.4 11/11 None
Y105C5A.11 ENSEMBL cdna:known chromosome:CEL140:IV:15637502:15640483:-1 gene:Y105C5A.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033708 3/11 Cross Hyb Matching Probes None
GENEFINDER00000033778 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15637205-15640489(-) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srg family
Gene Symbol srg-19
Ensembl ZC204.4
Y105C5A.11
Entrez Gene 190876 Entrez gene
SwissProt Q9U324 EMBL-EBI
WormBase CE33201 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37913 Serpentine receptor, class g (gamma) protein 20, isoform a [Caenorhabditis elegans] ref|NP_001022490.1| Serpentine Receptor, class G (gamma) family member (srg-20) [Caenorhabditis elegans] sp|P91535|SRG20_CAEEL Serpentine receptor class gamma-20 (Protein srg-20) 0.0
blast AAW88386 Serpentine receptor, class g (gamma) protein 20, isoform b [Caenorhabditis elegans] ref|NP_001022491.1| Serpentine Receptor, class G (gamma) family member (srg-20) [Caenorhabditis elegans] 0.0
blast CAB60301 Hypothetical protein Y105C5A.11 [Caenorhabditis elegans] ref|NP_502879.2| Serpentine Receptor, class G (gamma) family member (srg-19) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000609 EMBL-EBI Integral membrane protein Srg, nematode type 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022490.1 7 34-56,69-91,106-128,161-183,198-229,242-264,277-299
NP_001022491.1 7 34-56,69-91,106-128,161-183,198-229,242-264,277-299
NP_502879.2 7 34-56,69-91,106-128,161-183,198-229,242-264,277-299
ZC204.4a 7 34-56,69-91,106-128,161-183,198-229,242-264,277-299
ZC204.4b 7 34-56,69-91,106-128,161-183,198-229,242-264,277-299
Y105C5A.11 7 34-56,69-91,106-128,161-183,198-229,242-264,277-299
SNAP00000031402 7 34-56,69-91,106-128,161-183,198-229,242-264,277-299
Sequence
Target Sequence 
>C. ELEGANS:186738_S_AT
tcctctaggcgtcacctggaatattttggtgtcgagggtgtatattaacccaaatggtgc
ggggttttcagtcaattaccgggatgcggtggcatgggcgaacatttcatttttgcatct
ttttcattgcatcccgtgtcttttgctggtgatcgtgttctttttggcatcgatttttgg
gttaacgatgctggaaaatcggctgaggagtgctgagagatcgctgatcatttttacaat
gacgcttggtgtggagactatgctgttcgccattgctcagatctatttcgcatttcttgc
tggctacctacctgggatccgtcctttgatgcttgttatctcattcaacgtgttcgacgt
cctctacgtttacagccccatcgcattgatcctgatgaatcggcaactccgaagggatat
tttccatctgaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTCTAGGCGTCACCTGGAATATT 155 593 516 Antisense
GTTTTCAGTCAATTACCGGGATGCG 272 449 579 Antisense
TACCGGGATGCGGTGGCATGGGCGA 692 647 592 Antisense
ATTTCATTTTTGCATCTTTTTCATT 214 17 619 Antisense
TGCATCTTTTTCATTGCATCCCGTG 160 579 629 Antisense
GAAAATCGGCTGAGGAGTGCTGAGA 673 353 709 Antisense
CGCTGATCATTTTTACAATGACGCT 41 255 737 Antisense
CAATGACGCTTGGTGTGGAGACTAT 540 171 752 Antisense
TTGGTGTGGAGACTATGCTGTTCGC 243 709 761 Antisense
ATCGCATTGATCCTGATGAATCGGC 506 29 895 Antisense
CGAAGGGATATTTTCCATCTGAAAG 137 253 925 Antisense
Sequence Source Affymetrix Proprietary Database