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[186737_at] G-protein coupled receptor, srg family

Description Y105C5A.11 /REP_DB=WormBase Gene ID /WP=CE24051 /TR=Q9U324 /GB=CAB60301.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 02      6grp_cgc > 74      6grp_cgc_sub > 02_03_04_05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 3
(-2.7)
A 		2.8
(-3)
A 		4.5
(-0.5)
A 		6.9
(3)
A 		4
B 5
(-2.8)
A 		3.7
(-3)
A 		5.1
(-2.7)
A 		37.2
(3)
A 		34
C 3.1
(-1.9)
A 		4.1
(-0.1)
A 		2.5
(-3)
A 		5.8
(3)
A 		3
avr 3.7
(-2.9) 		3.5
(-3) 		4
(-2.8) 		16.6
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 2.5
(1.3)
A 		2.5
(1.3)
A 		2
(-3)
A 		2.5
(1.3)
A 		2.3
(-0.4)
A 		2.7
(3)
A 		1
B 1.3
(-3)
A 		4.2
(1.1)
A 		2.8
(-0.9)
A 		3.9
(0.7)
A 		5.5
(3)
A 		1.5
(-2.7)
A 		4
C 2.4
(-0.2)
A 		3.9
(3)
A 		3
(1.1)
A 		3.7
(2.6)
A 		2.8
(0.6)
A 		1.1
(-3)
A 		3
avr 2.1
(-1.9) 		3.5
(3) 		2.6
(-0.2) 		3.4
(2.6) 		3.5
(3) 		1.8
(-3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.1
(2)
A 		0.6
(-3)
A 		1.2
(3)
A 		1
(1)
A 		1
B 1.6
(-2.4)
A 		0.9
(-3)
A 		1.2
(-2.7)
A 		7.9
(3)
A 		7
C 1
(-1)
A 		1.2
(3)
A 		0.9
(-3)
A 		1
(-1)
A 		0
avr 1.2
(-2.3) 		0.9
(-3) 		1.1
(-2.5) 		3.3
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.5
(-1.8)
A 		0.9
(3)
A 		0.4
(-3)
A 		0.6
(-0.6)
A 		0.7
(0.6)
A 		0.7
(0.6)
A 		1
B 0.5
(-3)
A 		1.4
(0.2)
A 		0.7
(-2.3)
A 		1
(-1.2)
A 		2.2
(3)
A 		0.6
(-2.6)
A 		2
C 0.9
(0.8)
A 		1.2
(3)
A 		0.8
(0)
A 		0.7
(-0.8)
A 		0.9
(0.8)
A 		0.4
(-3)
A 		1
avr 0.6
(-3) 		1.2
(2.1) 		0.6
(-3) 		0.8
(-1.3) 		1.3
(3) 		0.6
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186737_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9273
Sequence Type Exemplar sequence
Representative Public ID Y105C5A.11 NCBI
Target Description Y105C5A.11 /REP_DB=WormBase Gene ID /WP=CE24051 /TR=Q9U324 /GB=CAB60301.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027320, NM_070478
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y105C5A.11 ENSEMBL cdna:known chromosome:CEL140:IV:15637502:15640483:-1 gene:Y105C5A.11 A 
NM_070478 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-19) (srg-19) mRNA, complete cds. A 
NM_001027320 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-20) (srg-20) mRNA, complete cds. None
ZC204.4b ENSEMBL cdna:known chromosome:CEL140:II:1636695:1638586:1 gene:ZC204.4 None
SNAP00000031402 ENSEMBL cdna:SNAP chromosome:CEL140:II:1636695:1638606:1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033708 8/11 Cross Hyb Matching Probes None
GENEFINDER00000033778 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15637205-15640489(-) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srg family
Gene Symbol srg-19
Ensembl ZC204.4
Y105C5A.11
Entrez Gene 190876 Entrez gene
SwissProt Q9U324 EMBL-EBI
WormBase CE33201 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60301 Hypothetical protein Y105C5A.11 [Caenorhabditis elegans] ref|NP_502879.2| Serpentine Receptor, class G (gamma) family member (srg-19) [Caenorhabditis elegans] 0.0
blast AAW88386 Serpentine receptor, class g (gamma) protein 20, isoform b [Caenorhabditis elegans] ref|NP_001022491.1| Serpentine Receptor, class G (gamma) family member (srg-20) [Caenorhabditis elegans] 0.0
blast AAB37913 Serpentine receptor, class g (gamma) protein 20, isoform a [Caenorhabditis elegans] ref|NP_001022490.1| Serpentine Receptor, class G (gamma) family member (srg-20) [Caenorhabditis elegans] sp|P91535|SRG20_CAEEL Serpentine receptor class gamma-20 (Protein srg-20) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000609 EMBL-EBI Integral membrane protein Srg, nematode type 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022491.1 7 34-56,69-91,106-128,161-183,198-229,242-264,277-299
NP_502879.2 7 34-56,69-91,106-128,161-183,198-229,242-264,277-299
ZC204.4b 7 34-56,69-91,106-128,161-183,198-229,242-264,277-299
Y105C5A.11 7 34-56,69-91,106-128,161-183,198-229,242-264,277-299
SNAP00000031402 7 34-56,69-91,106-128,161-183,198-229,242-264,277-299
Sequence
Target Sequence 
>C. ELEGANS:186737_AT
attttggtgtcgagggtgtatattaacccaaatggtgcggggttttcagtcaattaccgg
gatgcggtggcatgggcgaacatttcatttttgcatctttttcattgcatcccgtgtctt
ttgctggtgatcgtgttctttttggcatcgatttttgggttaacgatgctggaaaatcgg
ctgaggagtgctgagagatcgctgatcatttttacaatgacgcttggtgtggagactatg
ctgttcgccattgctcagatctatttcgcatttcttgctggctacctacctgggatccgt
cctttgatgcttgttatctcattcaacgtgttcgacgtcctctacgtttacagccccatc
gcattgatcctgatgaatcggcaactccgaagggatattttccatctgaaagacaacgct
gtcgaagggatcgcgaccgttggtcggatctgcaagcagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTTGGTGTCGAGGGTGTATATTA 661 1 538 Antisense
GTCTTTTGCTGGTGATCGTGTTCTT 118 467 653 Antisense
CGATTTTTGGGTTAACGATGCTGGA 269 247 686 Antisense
GATCCGTCCTTTGATGCTTGTTATC 32 417 831 Antisense
GATGCTTGTTATCTCATTCAACGTG 118 413 843 Antisense
TCATTCAACGTGTTCGACGTCCTCT 171 617 856 Antisense
TCGGCAACTCCGAAGGGATATTTTC 409 603 915 Antisense
TTTCCATCTGAAAGACAACGCTGTC 368 669 936 Antisense
GACAACGCTGTCGAAGGGATCGCGA 111 361 949 Antisense
CGAAGGGATCGCGACCGTTGGTCGG 145 253 960 Antisense
ACCGTTGGTCGGATCTGCAAGCAGT 706 87 973 Antisense
Sequence Source Affymetrix Proprietary Database