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[186736_at]

Description Y39A3CR.1 /REP_DB=WormBase Gene ID /WP=CE24228 /TR=Q9N405 /GB=AAF60526.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 35      6grp_cgc > 89      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 61.2
(-3)
A 		101.1
(3)
A 		99.6
(2.8)
A 		75.5
(-0.8)
A 		40
B 69.4
(-0.7)
A 		62.7
(-3)
A 		70.9
(-0.1)
A 		79.9
(3)
M 		17
C 73.4
(0.8)
A 		93.9
(3)
A 		38.6
(-3)
A 		92.6
(2.9)
P 		55
avr 68
(-3) 		85.9
(3) 		69.7
(-2.4) 		82.7
(1.9) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 59.1
(-2.1)
A 		45.9
(-3)
A 		64.3
(-1.7)
A 		99.6
(0.8)
A 		130.5
(3)
P 		79.3
(-0.6)
A 		85
B 27.7
(-3)
A 		78.7
(0.1)
A 		38
(-2.4)
A 		53.8
(-1.4)
A 		127.4
(3)
M 		61
(-1)
A 		100
C 86.8
(1.4)
A 		90.7
(1.7)
A 		80.8
(0.9)
A 		28.4
(-3)
A 		96.9
(2.2)
A 		108.1
(3)
A 		80
avr 57.9
(-3) 		71.8
(-1.6) 		61
(-2.7) 		60.6
(-2.7) 		118.3
(3) 		82.8
(-0.5) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 22.3
(1.5)
A 		21.9
(1.3)
A 		26
(3)
A 		11.1
(-3)
A 		15
B 22.1
(3)
A 		15.5
(-3)
A 		16.4
(-2.2)
A 		17
(-1.6)
M 		7
C 24.3
(1.8)
A 		27
(3)
A 		13.5
(-3)
A 		15.6
(-2.1)
P 		14
avr 22.9
(3) 		21.5
(2) 		18.6
(-0.1) 		14.6
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 10.9
(-3)
A 		16.3
(-1.9)
A 		14
(-2.3)
A 		25.3
(0)
A 		39.4
(3)
P 		19.3
(-1.2)
A 		29
B 9.6
(-2.9)
A 		26.2
(-0.6)
A 		9.2
(-3)
A 		14.2
(-2.3)
A 		51.8
(3)
M 		22.7
(-1.1)
A 		43
C 32.2
(2.2)
A 		27.7
(1.3)
A 		20.6
(-0.1)
A 		5.7
(-3)
A 		31.3
(2)
A 		36.2
(3)
A 		31
avr 17.6
(-2.3) 		23.4
(-1) 		14.6
(-3) 		15.1
(-2.9) 		40.8
(3) 		26.1
(-0.4) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186736_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8108
Sequence Type Exemplar sequence
Representative Public ID Y39A3CR.1 NCBI
Target Description Y39A3CR.1 /REP_DB=WormBase Gene ID /WP=CE24228 /TR=Q9N405 /GB=AAF60526.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027677, NM_001027676
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000029616 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1878362:1881142:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067597 1/11 Cross Hyb Matching Probes None
NM_001027676 5/11 Cross Hyb Matching Probes None
NM_001027677 6/11 Cross Hyb Matching Probes None
SNAP00000029614 3/11 Cross Hyb Matching Probes None
Y39A3CR.1a 5/11 Cross Hyb Matching Probes None
Y39A3CR.1b 6/11 Cross Hyb Matching Probes None
Y55F3BR.6 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1878361-1881142(+) 83.78 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60526 Smn (survival of motor neuron) protein interactor protein 1, isoform a [Caenorhabditis elegans] ref|NP_001022847.1| SMN (survival of motor neuron) protein Interactor family member (smi-1) [Caenorhabditis elegans] 8.0E-84
blast CAE69157 Hypothetical protein CBG15188 [Caenorhabditis briggsae] 4.0E-41
blast AAP31427 Smn (survival of motor neuron) protein interactor protein 1, isoform b [Caenorhabditis elegans] ref|NP_001022848.1| SMN (survival of motor neuron) protein Interactor family member (smi-1) [Caenorhabditis elegans] 1.0E-21
Sequence
Target Sequence 
>C. ELEGANS:186736_AT
tatcgatttttcacccaaaattccttccagaagcctccgctccgagctatcgattgatcg
aaaatcagaagccaacgagttctcactgttcatcacaattatcacgattttcttcgggca
aaaagatttggcggatatttaaattatttgttctttttttgtttctcgaattttccacac
attcttcacatgatcctcctccttctccgcgttgtttttttgtgttttgcgatttgttga
aaataaatcaacttttttcggaaatactgtatcatgaatatattgaatcgatagaaaatc
aaattctgaaaatttctgcatttggaagttttttgatatctctaatcaccgctgagacag
cgcgtctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCGATTTTTCACCCAAAATTCCT 354 651 575 Antisense
ATCAGAAGCCAACGAGTTCTCACTG 288 29 638 Antisense
CTCACTGTTCATCACAATTATCACG 618 227 656 Antisense
ATTATCACGATTTTCTTCGGGCAAA 512 13 672 Antisense
TTCTCGAATTTTCCACACATTCTTC 374 693 737 Antisense
TCCACACATTCTTCACATGATCCTC 246 589 748 Antisense
TTTTTGTGTTTTGCGATTTGTTGAA 704 673 791 Antisense
CTTTTTTCGGAAATACTGTATCATG 128 221 826 Antisense
AATTTCTGCATTTGGAAGTTTTTTG 167 173 885 Antisense
TTTGATATCTCTAATCACCGCTGAG 579 667 906 Antisense
ATCACCGCTGAGACAGCGCGTCTCT 320 27 919 Antisense
Sequence Source Affymetrix Proprietary Database